Evidence map›Paper›PMID 31827253›Full record

ArticleJournal of human genetics2020

Exome sequencing identifies de novo splicing variant in XRCC6 in sporadic case of autism.

Calvin P Sjaarda, Shalandra Wood, Amy J M McNaughton, Sarah Taylor, Melissa L Hudson, Xudong Liu, Andrea Guerin, Muhammad Ayub

Abstract read
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Article in Journal of human genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Calvin P SjaardaQueen's Genomics Lab at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, ON, Canada. cs205@queensu.ca.ORCID http://orcid.org/0000-0002-9787-1915
Shalandra WoodQueen's Genomics Lab at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, ON, Canada.
Amy J M McNaughtonQueen's Genomics Lab at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, ON, Canada.
Sarah TaylorQueen's Genomics Lab at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, ON, Canada.
Melissa L HudsonQueen's Genomics Lab at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, ON, Canada.
Xudong LiuQueen's Genomics Lab at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, ON, Canada.
Andrea GuerinDepartment of Pediatrics, Queen's University, Kingston, ON, Canada.
Muhammad AyubDepartment of Psychiatry, Queen's University, Kingston, ON, Canada.
Queen's University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autism spectrum disorder (ASD) is a complex neurodevelopmental disorder with heterogeneity in presentation, genetic etiology, and clinical outcome. Although numerous ASD susceptibility genes have been described, they only account for a small fraction of the estimated heritability, supporting the need to identify more risk variants. This study reports the whole exome sequencing for 24 simplex families with sporadic cases of ASD. These families were selected following a rigorous family history study designed to exclude families with any history of neurodevelopmental or psychiatric disease. Fifteen rare, de novo variants, including fourteen missense variants and one splicing variant, in thirteen families were identified. We describe a splicing variant in XRCC6 which was predicted to destroy the 5' splice site in intron 9 and introduce a premature stop codon. We observed intron 9 retention in XRCC6 transcripts and reduced XRCC6 expression in the proband. Reduced XRCC6 activity and function may be relevant to ASD etiology due to XRCC6's role in nonhomologous DNA repair and interactions of the C-terminal SAP domain with DEAF1, a nuclear transcriptional regulator that is important during embryonic development.

Indexed as

Genetic Predisposition to DiseaseAdultAutistic DisorderDNA-Binding ProteinsDNA RepairExomeExome SequencingFemaleHumansKu AutoantigenMaleMutation, MissenseProtein IsoformsRNA Splice SitesRNA SplicingTranscription FactorsDEAF1 protein, humanDNA-Binding ProteinsKu AutoantigenProtein IsoformsRNA Splice SitesTranscription FactorsXrcc6 protein, human

Identifiers

PMID31827253
OpenAlexW2996684603

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.