Evidence map›Paper›PMID 31827103›Full record

ArticleNature communications2019

An intravital window to image the colon in real time.

Nikolai Rakhilin, Aliesha Garrett, Chi-Yong Eom, Katherine Ramos Chavez, David M Small, Andrea R Daniel, Melanie M Kaelberer, Menansili A Mejooli, Qiang Huang, Shengli Ding and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

  1. In Vivo Microendoscopy in the Near-Infrared II Window.Small (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
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  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Gut feelings: mechanosensing in the gastrointestinal tract.Nature reviews. Gastroenterology & hepatology · 2022
    Review
  13. Multiphoton intravital microscopy of rodents.Nature reviews. Methods primers · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Frontiers in immunology · 2021
    Review
  20. Functional circuits and signal processing in the enteric nervous system.Cellular and molecular life sciences : CMLS · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Nikolai RakhilinDepartment of Biomedical Engineering, Duke University, Durham, NC, 27710, USA.
Aliesha GarrettDepartment of Biomedical Engineering, Duke University, Durham, NC, 27710, USA.ORCID http://orcid.org/0000-0002-6618-3036
Chi-Yong EomSchool of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.
Katherine Ramos ChavezDepartment of Biomedical Engineering, Duke University, Durham, NC, 27710, USA.
David M SmallSchool of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.
Andrea R DanielDepartment of Radiation Oncology, Duke University Medical Center, Durham, NC, 27710, USA.
Melanie M KaelbererDepartment of Medicine, Duke University Medical Center, Durham, NC, 27710, USA.
Menansili A MejooliSchool of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.
Qiang HuangDepartment of Biomedical Engineering, Duke University, Durham, NC, 27710, USA.
Shengli DingDepartment of Biomedical Engineering, Duke University, Durham, NC, 27710, USA.
David G KirschDepartment of Radiation Oncology, Duke University Medical Center, Durham, NC, 27710, USA.ORCID http://orcid.org/0000-0002-2086-205X
Diego V BohórquezDepartment of Medicine, Duke University Medical Center, Durham, NC, 27710, USA.ORCID http://orcid.org/0000-0003-3434-2212
Nozomi NishimuraSchool of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.ORCID http://orcid.org/0000-0003-4342-9416
Bradley B BarthDepartment of Biomedical Engineering, Duke University, Durham, NC, 27710, USA. bradley.barth@duke.edu.ORCID http://orcid.org/0000-0002-4344-7182
Xiling ShenDepartment of Biomedical Engineering, Duke University, Durham, NC, 27710, USA. xiling.shen@duke.edu.
Duke University · USCornell University · USDuke Medical Center · US

Funding

DUKE TRAINING GRANT IN DIGESTIVE DISEASES AND NUTRITIONT32DK007568 · NIDDK · DUKE UNIVERSITY · PI Katherine Garman, Rodger A. Liddle · 1988 to 2026
$5.6M
Robust Control of the Stem Cell NicheR35GM122465 · NIGMS · TERASAKI INSTITUTE FOR BIOMEDICAL INNOVATION · PI Xiling Shen · 2017 to 2026
$5.6M
Developing a comprehensive model for peripheral nerve stimulation of gastrointestinal functionR01DK119795 · NIDDK · TERASAKI INSTITUTE FOR BIOMEDICAL INNOVATION · PI SHEN, XILING · 2019 to 2022
$1.8M
Age Compromises Novel Motility and Repair Functions in Stem Cell Niche of Intestinal CryptsR21AG058173 · NIA · CORNELL UNIVERSITY · PI NISHIMURA, NOZOMI · 2018 to 2019
$469k
NIA NIH HHS R21 AG058173NIDDK NIH HHS R01 DK119795NIDDK NIH HHS T32 DK007568NIGMS NIH HHS R35 GM122465
6 · The paper itself

Abstract

Intravital microscopy is a powerful technique to observe dynamic processes with single-cell resolution in live animals. No intravital window has been developed for imaging the colon due to its anatomic location and motility, although the colon is a key organ where the majority of microbiota reside and common diseases such as inflammatory bowel disease, functional gastrointestinal disorders, and colon cancer occur. Here we describe an intravital murine colonic window with a stabilizing ferromagnetic scaffold for chronic imaging, minimizing motion artifacts while maximizing long-term survival by preventing colonic obstruction. Using this setup, we image fluorescently-labeled stem cells, bacteria, and immune cells in live animal colons. Furthermore, we image nerve activity via calcium imaging in real time to demonstrate that electrical sacral nerve stimulation can activate colonic enteric neurons. The simple implantable apparatus enables visualization of live processes in the colon, which will open the window to a broad range of studies.

Indexed as

AnimalsCell MovementColonFluorescent DyesIntravital MicroscopyIn Vitro TechniquesMiceMice, Inbred C57BLOptical ImagingStem CellsFluorescent Dyes

Identifiers

PMID31827103
PMCPMC6906443
OpenAlexW2996419311

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.