Evidence map›Paper›PMID 31827092›Full record

ArticleNature communications2019

BRCA1 intronic Alu elements drive gene rearrangements and PARP inhibitor resistance.

Yifan Wang, Andrea J Bernhardy, Joseph Nacson, John J Krais, Yin-Fei Tan, Emmanuelle Nicolas, Marc R Radke, Elizabeth Handorf, Alba Llop-Guevara, Judith Balmaña and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 60 citations in OpenAlex.

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  15. Identifying Relationships betweenAnimals : an open access journal from MDPI · 2024
    Article
  16. Circulating Tumor DNA Enables Sensitive Detection of Actionable Gene Fusions and Rearrangements Across Cancer Types.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  17. Article
  18. Article
  19. BRACNAC: AInternational journal of molecular sciences · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Yifan WangMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Andrea J BernhardyMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Joseph NacsonMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
John J KraisMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.ORCID http://orcid.org/0000-0002-3916-3435
Yin-Fei TanGenomics Facility, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Emmanuelle NicolasMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Marc R RadkeDepartment of Obstetrics and Gynecology, University of Washington, Seattle, WA, USA.
Elizabeth HandorfBioinformatics and Statistics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Alba Llop-GuevaraExperimental Therapeutics Group, Vall d'Hebron Institute of Oncology, Barcelona, Spain.
Judith BalmañaHereditary Cancer Genetics Group, Vall d'Hebron Institute of Oncology, Barcelona, Spain.
Elizabeth M SwisherDepartment of Obstetrics and Gynecology, University of Washington, Seattle, WA, USA.
Violeta SerraExperimental Therapeutics Group, Vall d'Hebron Institute of Oncology, Barcelona, Spain.ORCID http://orcid.org/0000-0001-6620-1065
Suraj PeriBioinformatics and Statistics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Neil JohnsonMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA. neil.johnson@fccc.edu.
Fox Chase Cancer Center · USVall d'Hebron Institute of Oncology · ESUniversity of Washington · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
Therapeutic Micro RNA Strategies for Ovarian CancerP50CA083638 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI GODWIN, ANDREW K., GOLEMIS, ERICA A. · 1999 to 2013
$33.6M
Compensatory Mechanisms that Promote Homologous Recombination in BRCA1 Mutant CancersR01CA214799 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Neil Johnson · 2017 to 2026
$4.3M
NCI NIH HHS P30 CA006927NCI NIH HHS P50 CA083638NCI NIH HHS R01 CA214799
6 · The paper itself

Abstract

BRCA1 mutant carcinomas are sensitive to PARP inhibitor (PARPi) therapy; however, resistance arises. BRCA1 BRCT domain mutant proteins do not fold correctly and are subject to proteasomal degradation, resulting in PARPi sensitivity. In this study, we show that cell lines and patient-derived tumors, with highly disruptive BRCT domain mutations, have readily detectable BRCA1 protein expression, and are able to proliferate in the presence of PARPi. Peptide analyses reveal that chemo-resistant cancers contain residues encoded by BRCA1 intron 15. Mechanistically, cancers with BRCT domain mutations harbor BRCA1 gene breakpoints within or adjacent to Alu elements in intron 15; producing partial gene duplications, inversions and translocations, and terminating transcription prior to the mutation-containing BRCT domain. BRCA1 BRCT domain-deficient protein isoforms avoid mutation-induced proteasomal degradation, support homology-dependent DNA repair, and promote PARPi resistance. Taken together, Alu-mediated BRCA1 gene rearrangements are responsible for generating hypomorphic proteins, and may represent a biomarker of PARPi resistance.

Indexed as

Alu ElementsGene RearrangementIntronsAnimalsAntineoplastic AgentsBRCA1 ProteinBreast NeoplasmsChromosome InversionDrug Resistance, NeoplasmFemaleHumansMiceMice, NudePoly(ADP-ribose) Polymerase InhibitorsTranslocation, GeneticAntineoplastic AgentsBRCA1 ProteinBRCA1 protein, humanPoly(ADP-ribose) Polymerase Inhibitors

Identifiers

PMID31827092
PMCPMC6906494
OpenAlexW2994958515

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.