Evidence map›Paper›PMID 31826975›Full record

ArticlemSphere2019

Rectal Microbiome Composition Correlates with Humoral Immunity to HIV-1 in Vaccinated Rhesus Macaques.

Sonny R Elizaldi, Anil Verma, Korey A Walter, Matthew Rolston, Ashok R Dinasarapu, Blythe P Durbin-Johnson, Matthew Settles, Pamela A Kozlowski, Reben Raeman, Smita S Iyer

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

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  11. Microbiome Studies in Non-human Primates.Current HIV/AIDS reports · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Sonny R ElizaldiGraduate Group in Immunology, University of California, Davis, California, USA.
Anil VermaThe Center for Immunology and Infectious Diseases, University of California, Davis, California, USA.
Korey A WalterDepartment of Microbiology, Immunology, and Parasitology, Louisiana State University Health Sciences Center, New Orleans, Louisiana, USA.
Matthew RolstonHost Microbe Systems Biology Core, University of California, Davis, California, USA.
Ashok R DinasarapuDepartment of Human Genetics, Emory University, Atlanta, Georgia, USA.
Blythe P Durbin-JohnsonDivision of Biostatistics, School of Medicine, University of California, Davis, California, USA.
Matthew SettlesUC Davis Genome Center, Davis, California, USA.
Pamela A KozlowskiDepartment of Microbiology, Immunology, and Parasitology, Louisiana State University Health Sciences Center, New Orleans, Louisiana, USA.
Reben RaemanDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Smita S IyerThe Center for Immunology and Infectious Diseases, University of California, Davis, California, USA smiyer@ucdavis.edu.
University of California, Davis · USLouisiana State University Health Sciences Center New Orleans · USEmory University · USUniversity of Pittsburgh · US

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
Targeting CD4 TFH cells to enhance HIV vaccine-induced humoral immunityK01OD023034 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI IYER, SWAMINATHAN SMITA · 2016 to 2018
$1.0M
Role of CD4 T cells in the pathogenesis of non-alcoholic steatohepatitisK01DK110264 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI RAEMAN, REBEN · 2017 to 2021
$702k
Role of female genital mucosa associated CD4 T cells in vaccine-induced HIV susceptibilityR21AI143454 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI IYER, SWAMINATHAN SMITA · 2019 to 2020
$623k
Role of vaginal microbiome and metabolome in HIV vaccine efficacyR03AI138792 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI IYER, SWAMINATHAN SMITA · 2018 to 2019
$157k
NIAID NIH HHS R03 AI138792NIAID NIH HHS R21 AI143454NIDDK NIH HHS K01 DK110264NIH HHS K01 OD023034NIH HHS P51 OD011107
6 · The paper itself

Abstract

The microbiome is an integral and dynamic component of the host and is emerging as a critical determinant of immune responses; however, its influence on vaccine immunogenicity is largely not well understood. Here, we examined the pivotal relationship between the mucosal microbiome and vaccine-induced immune responses by assessing longitudinal changes in vaginal and rectal microbiome profiles after intradermal immunization with a human immunodeficiency virus type 1 (HIV-1) DNA vaccine in adult rhesus macaques that received two prior DNA primes. We report that both vaginal and rectal microbiomes were dominated by

Indexed as

MicrobiotaAIDS VaccinesAnimalsBacteriaFemaleHIV-1HIV AntibodiesInjections, IntradermalLongitudinal StudiesMacaca mulattaRectumVaccines, DNAVaginaAIDS VaccinesHIV AntibodiesVaccines, DNAantibody responseDNAHIV-1microbiomevaccine

Identifiers

PMID31826975
PMCPMC6908426
OpenAlexW2992160804

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.