Evidence map›Paper›PMID 31825950›Full record

ArticleMedical science monitor : international medical journal of experimental and clinical research2019

The Role of Serine Peptidase Inhibitor Kazal Type 13 (SPINK13) as a Clinicopathological and Prognostic Biomarker in Patients with Clear Cell Renal Cell Carcinoma.

Wen-Hao Xu, Shen-Nan Shi, Jun Wang, Yue Xu, Xi Tian, Fang-Ning Wan, Da-Long Cao, Yuan-Yuan Qu, Hai-Liang Zhang, Ding-Wei Ye

Open access · hybridAbstract read
In one paragraph

Article in Medical science monitor : international medical journal of experimental and clinical research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Wen-Hao XuDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China (mainland).
Shen-Nan ShiDepartment of Oncology, Shanghai Medical College, Fudan University, Shanghai, China (mainland).
Jun WangDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China (mainland).
Yue XuDepartment of Ophthalmology, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu, China (mainland).
Xi TianDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China (mainland).
Fang-Ning WanDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China (mainland).
Da-Long CaoDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China (mainland).
Yuan-Yuan QuDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China (mainland).
Hai-Liang ZhangDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China (mainland).
Ding-Wei YeDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China (mainland).
Fudan University Shanghai Cancer Center · CNShanghai Medical College of Fudan University · CNSoochow University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND The serine peptidase inhibitor Kazal type 13 (SPINK13) gene has tumor suppressor activity, but its role in renal cell carcinoma (RCC) remains unknown. This study aimed to investigate mRNA expression of SPINK13 in clear cell renal cell carcinoma (CCRCC) in human tissue and to use bioinformatics data to investigate the role of SPINK13 expression as a clinicopathological and prognostic biomarker for patients with CCRCC. MATERIAL AND METHODS Patients with CCRCC (N=533) with available RNA sequence data from The Cancer Genome Atlas (TCGA)-CCRCC database were analyzed with patients who had a tissue diagnosis of CCRCC (N=305) at the Fudan University Shanghai Cancer Center (FUSCC). Differential transcriptional and proteome expression profiles were obtained from the ONCOMINE cancer microarray database, TCGA, and the Human Protein Atlas (HPA) database. Quantitative reverse transcription-polymerase chain reaction (RT-qPCR) measured SPINK13 mRNA expression in 305 samples of CCRCC tissue from the FUSCC. The effects of clinicopathological parameters on progression-free survival (PFS) and overall survival (OS) were analyzed using the Kaplan-Meier and log-rank test. RESULTS Transcriptional and proteome expression of SPINK13 were significantly increased CCRCC tissue samples. Increased SPINK13 mRNA expression was significantly associated with reduced PFS and OS in 838 patients with CCRCC patients from the two independent cohorts, the FUSCC and the TCGA-CCRCC cohorts (p<0.01). Gene set enrichment analysis (GSEA) showed that SPINK13 expression was involved in complement, apical junction, epithelial-mesenchymal transition (EMT), glycolysis, hypoxia, and inflammation signaling pathways. CONCLUSIONS Increased expression of SPINK13 was associated with poor prognosis in patients with CCRCC.

Indexed as

AdultAgedBiomarkers, TumorCarcinoma, Renal CellCell ProliferationComputational BiologyDatabases, GeneticDisease-Free SurvivalEpithelial-Mesenchymal TransitionFemaleHumansKaplan-Meier EstimateKidney NeoplasmsMaleMiddle AgedPrognosisBiomarkers, TumorSerine Peptidase Inhibitors, Kazal Type

Identifiers

PMID31825950
PMCPMC6926094
OpenAlexW2995345304

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.