Evidence map›Paper›PMID 31825308›Full record

ArticleeLife2019

Axon TRAP reveals learning-associated alterations in cortical axonal mRNAs in the lateral amgydala.

Linnaea E Ostroff, Emanuela Santini, Robert Sears, Zachary Deane, Rahul N Kanadia, Joseph E LeDoux, Tenzin Lhakhang, Aristotelis Tsirigos, Adriana Heguy, Eric Klann

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 74 citations in OpenAlex.

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  13. Presynaptic Protein Synthesis in Brain Function and Disease.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
  14. Control of Selective mRNA Translation in Neuronal Subcellular Compartments in Health and Disease.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Linnaea E OstroffDepartment of Physiology and Neurobiology, University of Connecticut, Storrs, United States.ORCID https://orcid.org/0000-0002-3348-342X
Emanuela Santini *Department of Neuroscience, Karolinska Institutet, Solna, Sweden.
Robert Sears *Center for Neural Science, New York University, New York, United States.
Zachary DeaneDepartment of Physiology and Neurobiology, University of Connecticut, Storrs, United States.
Rahul N KanadiaDepartment of Physiology and Neurobiology, University of Connecticut, Storrs, United States.
Joseph E LeDouxCenter for Neural Science, New York University, New York, United States.
Tenzin LhakhangApplied Bioinformatics Laboratories, New York University School of Medicine, New York, United States.
Aristotelis TsirigosApplied Bioinformatics Laboratories, New York University School of Medicine, New York, United States.
Adriana HeguyDepartment of Pathology, New York University School of Medicine, New York, United States.
Eric KlannCenter for Neural Science, New York University, New York, United States.ORCID https://orcid.org/0000-0001-7379-6802
New York University · USUniversity of Connecticut · USNathan Kline Institute for Psychiatric Research · USKarolinska Institutet · SENew York Genome Center · US

Funding

Strategies to rescue PI3K dysregulation in Fragile X SyndromeU54HD082013 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RICHTER, JOEL D · 2014 to 2019
$10.2M
ENNCF - Viral Vector CoreP30NS055077 · NINDS · EMORY UNIVERSITY · PI WEINSHENKER, DAVID · 2008 to 2018
$6.8M
Translation Regulation in Hippocampal LTP and LTDR01NS047384 · NINDS · NEW YORK UNIVERSITY · PI KLANN, ERIC · 2005 to 2020
$5.2M
Reactive Oxygen Species Signaling in the HippocampusR01NS034007 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLANN, ERIC · 2000 to 2012
$4.2M
eIF2alpha Phosphorylation in Synaptic Plasticity, Memory, and Brain DisordersR37NS034007 · NINDS · NEW YORK UNIVERSITY · PI KLANN, ERIC · 2014 to 2020
$3.3M
Understanding the role of minor intron splicing in cortical developmentR01NS102538 · NINDS · UNIVERSITY OF CONNECTICUT STORRS · PI KANADIA, RAHUL N · 2018 to 2022
$1.8M
STRIATAL SPECIFIC ALTERATIONS IN TRANSLATION, SYNAPTIC FUNCTION, AND BEHAVIOR INR00NS087112 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SANTINI, EMANUELA · 2017 to 2018
$498k
Leica TCS SP8 FSU AOBS 405 UV Spectral Confocal MicroscopeS10OD016435 · OD · UNIVERSITY OF CONNECTICUT STORRS · PI NISHIYAMA, AKIKO · 2014 to 2014
$456k
Methods for serially multiplexed labeling in EM reconstructions of brain tissueR21MH119517 · NIMH · UNIVERSITY OF CONNECTICUT STORRS · PI OSTROFF, LINNAEA E · 2019 to 2020
$442k
Development of genetically encoded neural tracers for electron microscopyR21MH094965 · NIMH · NEW YORK UNIVERSITY · PI OSTROFF, LINNAEA E · 2011 to 2012
$383k
Striatal Specific Alterations in Translation, Synaptic Function, and Behavior inK99NS087112 · NINDS · NEW YORK UNIVERSITY · PI SANTINI, EMANUELA · 2014 to 2015
$163k
Synaptic tagging in the lateral amygdala fear conditioning circuitF32MH083583 · NIMH · NEW YORK UNIVERSITY · PI OSTROFF, LINNAEA E · 2008 to 2010
$160k
NICHD NIH HHS U54 HD082013NIH HHS S10 OD016435NIMH NIH HHS F32 MH083583NIMH NIH HHS MH083583NIMH NIH HHS MH094965NIMH NIH HHS MH119517NIMH NIH HHS R21 MH094965NIMH NIH HHS R21 MH119517NINDS NIH HHS K99 NS087112NINDS NIH HHS NS034007NINDS NIH HHS NS047384NINDS NIH HHS NS087112NINDS NIH HHS P30 NS055077NINDS NIH HHS R00 NS087112NINDS NIH HHS R01 NS034007NINDS NIH HHS R01 NS047384NINDS NIH HHS R01 NS102538NINDS NIH HHS R29 NS034007NINDS NIH HHS R37 NS034007
6 · The paper itself

Abstract

Local translation can support memory consolidation by supplying new proteins to synapses undergoing plasticity. Translation in adult forebrain dendrites is an established mechanism of synaptic plasticity and is regulated by learning, yet there is no evidence for learning-regulated protein synthesis in adult forebrain axons, which have traditionally been believed to be incapable of translation. Here, we show that axons in the adult rat amygdala contain translation machinery, and use translating ribosome affinity purification (TRAP) with RNASeq to identify mRNAs in cortical axons projecting to the amygdala, over 1200 of which were regulated during consolidation of associative memory. Mitochondrial and translation-related genes were upregulated, whereas synaptic, cytoskeletal, and myelin-related genes were downregulated; the opposite effects were observed in the cortex. Our results demonstrate that axonal translation occurs in the adult forebrain and is altered after learning, supporting the likelihood that local translation is more a rule than an exception in neuronal processes.

Indexed as

LearningProtein BiosynthesisAnimalsAxonsBasolateral Nuclear ComplexCerebral CortexRatsRNA, MessengerSequence Analysis, RNARNA, Messengeramygdalaaxonal translationlocal translationmemory consolidationneurosciencerattranslatome

Identifiers

PMID31825308
PMCPMC6924958
OpenAlexW2996402848

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.