Evidence map›Paper›PMID 31825181›Full record

ArticleBirth defects research2020

PBX-WNT-P63-IRF6 pathway in nonsyndromic cleft lip and palate.

Lorena Maili, Ariadne Letra, Renato Silva, Edward P Buchanan, John B Mulliken, Matthew R Greives, John F Teichgraeber, Steven J Blackwell, Rohit Ummer, Ryan Weber and 3 more

Open access · greenAbstract read
In one paragraph

Article in Birth defects research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Association betweenGenes · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Genome-Wide Scan for Parent-of-Origin Effects in a sub-Saharan African Cohort With Nonsyndromic Cleft Lip and/or Cleft Palate (CL/P).The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association · 2022
    Article
  10. Orofacial Cleft and Mandibular Prognathism-Human Genetics and Animal Models.International journal of molecular sciences · 2022
    Review
  11. Observational
  12. Review
  13. Article
  14. Article
  15. Identification of a Novel Variant ofBioMed research international · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Lorena MailiDepartment of Pediatrics, University of Texas Health Science Center McGovern Medical School at Houston, Houston, Texas.ORCID 0000-0001-7695-4319
Ariadne LetraDepartment of Diagnostic and Biomedical Sciences, University of Texas Health Science Center School of Dentistry at Houston, Houston, Texas.ORCID 0000-0002-7197-6735
Renato SilvaCenter for Craniofacial Research, University of Texas Health Science Center School of Dentistry at Houston, Houston, Texas.
Edward P BuchananDepartment of Plastic Surgery, Texas Children's Hospital, Houston, Texas.
John B MullikenBoston Children's Hospital, Boston, Massachusetts.
Matthew R GreivesDepartment of Pediatric Surgery, University of Texas Health Science Center McGovern Medical School at Houston, Houston, Texas.
John F TeichgraeberDepartment of Pediatric Surgery, University of Texas Health Science Center McGovern Medical School at Houston, Houston, Texas.
Steven J BlackwellShriners Hospital for Children Houston, Houston, Texas.
Rohit UmmerCenter for Craniofacial Research, University of Texas Health Science Center School of Dentistry at Houston, Houston, Texas.
Ryan WeberCenter for Craniofacial Research, University of Texas Health Science Center School of Dentistry at Houston, Houston, Texas.
Brett ChiquetCenter for Craniofacial Research, University of Texas Health Science Center School of Dentistry at Houston, Houston, Texas.
Susan H BlantonDr. John T. MacDonald Foundation Department of Human Genetics, John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida.
Jacqueline T HechtDepartment of Pediatrics, University of Texas Health Science Center McGovern Medical School at Houston, Houston, Texas.
The University of Texas Health Science Center at Houston · USThe University of Texas Health Science Center · USBoston Children's Hospital · USShriners Hospitals for Children - Houston · USTexas Children's Hospital · USUniversity of Miami · US

Funding

MOLECULAR STUDIES IN NONSYNDROMIC CLEFT LIP AND PALATER01DE011931 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BLANTON, SUSAN HALLORAN, HECHT, JACQUELINE T · 1999 to 2017
$7.6M
Matrix Metalloproteinase Gene Variants and Cleft Lip and PalateR00DE018954 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LETRA, ARIADNE M · 2010 to 2012
$658k
NIDCR NIH HHS R00 DE018954NIDCR NIH HHS R01 DE011931
6 · The paper itself

Abstract

Nonsyndromic cleft lip and palate (NSCLP) is one of the most common craniofacial anomalies in humans, affecting more than 135,000 newborns worldwide. NSCLP has a multifactorial etiology with more than 50 genes postulated to play an etiologic role. The genetic pathway comprised of Pbx-Wnt-p63-Irf6 genes was shown to control facial morphogenesis in mice and proposed as a regulatory pathway for NSCLP. Based on these findings, we investigated whether variation in PBX1, PBX2, and TP63, and their proposed interactions were associated with NSCLP. Fourteen single nucleotide variants (SNVs) in/nearby PBX1, PBX2, and TP63 were genotyped in 780 NSCLP families of nonHispanic white (NHW) and Hispanic ethnicities. Family-based association tests were performed for individual SNVs stratified by ethnicity and family history of NSCLP. Gene-gene interactions were also tested. A significant association was found for PBX2 rs3131300 and NSCLP in combined Hispanic families (p = .003) while nominal association was found for TP63 rs9332461 in multiplex Hispanic families (p = .005). Significant haplotype associations were observed for PBX2 in NHW (p = .0002) and Hispanic families (p = .003), and for TP63 in multiplex Hispanic families (.003). An independent case-control group was used to validate findings, and significant associations were found with PBX1 rs6426870 (p = .007) and TP63 rs9332461 (p = .03). Gene-gene interactions were detected between PBX1/PBX2/TP63 with IRF6 in NHW families, and between PBX1 with WNT9B in both NHW and Hispanic families (p < .0018). This study provides the first evidence for a role of PBX1 and PBX2, additional evidence for the role of TP63, and support for the proposed PBX-WNT-TP63-IRF6 regulatory pathway in the etiology of NSCLP.

Indexed as

Cleft LipCleft PalateAnimalsGenetic Predisposition to DiseaseHomeodomain ProteinsHumansInfant, NewbornInterferon Regulatory FactorsMicePolymorphism, Single NucleotidePre-B-Cell Leukemia Transcription Factor 1Proto-Oncogene ProteinsTrans-ActivatorsTranscription FactorsTumor Suppressor ProteinsWnt Signaling PathwayHomeodomain ProteinsInterferon Regulatory FactorsIRF6 protein, humanIRF6 protein, mousePBX2 protein, humanPbx2 protein, mousePre-B-Cell Leukemia Transcription Factor 1Proto-Oncogene ProteinsTP63 protein, humanTrans-ActivatorsTranscription FactorsTrp63 protein, mouseTumor Suppressor Proteins

Identifiers

PMID31825181
PMCPMC7325739
OpenAlexW2995553189

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.