Evidence map›Paper›PMID 31823826›Full record

ArticleGenome biology2019

The Pseudomonas aeruginosa accessory genome elements influence virulence towards Caenorhabditis elegans.

Alejandro Vasquez-Rifo, Isana Veksler-Lublinsky, Zhenyu Cheng, Frederick M Ausubel, Victor Ambros

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Adaptive evolution ofMicrobial genomics · 2026
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  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. What Makes Pseudomonas aeruginosa a Pathogen?Advances in experimental medicine and biology · 2022
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Transcriptome Analysis ofAdvances and applications in bioinformatics and chemistry : AABC · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Alejandro Vasquez-RifoProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, 01605, USA. alejandro.vasquezrifo@umassmed.edu.ORCID 0000-0003-4707-558X
Isana Veksler-LublinskyDepartment of Software and Information Systems Engineering, Ben-Gurion University of the Negev, Beer-Sheva, Israel. vaksler@post.bgu.ac.il.
Zhenyu ChengDepartment of Microbiology & Immunology, Dalhousie University, Halifax, Nova Scotia, Canada.
Frederick M AusubelDepartment of Molecular Biology, Massachusetts General Hospital, Boston, MA, 02114, USA.
Victor AmbrosProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
University of Massachusetts Chan Medical School · USBen-Gurion University of the Negev · ILDalhousie University · CAHarvard University · US

Funding

ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Elizabeth Austen Lawson, Takara Leah Stanley · 1994 to 2026
$31.6M
GENETIC CONTROL OF NEMATODE DEVELOPMENTR01GM034028 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI AMBROS, VICTOR · 1985 to 2018
$7.0M
Identifying novel anti-infectives by high through-put screening in whole animalsR01AI085581 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI AUSUBEL, FREDERICK M · 2009 to 2013
$4.7M
Developmental Regulation of MicroRNA ExpressionR01GM088365 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI AMBROS, VICTOR · 2009 to 2010
$771k
NIH HHS P30DK040561NIH HHS R01AI085581NIH HHS R01GM034028NIH HHS R01GM088365
6 · The paper itself

Abstract

backgroundMulticellular animals and bacteria frequently engage in predator-prey and host-pathogen interactions, such as the well-studied relationship between Pseudomonas aeruginosa and the nematode Caenorhabditis elegans. This study investigates the genomic and genetic basis of bacterial-driven variability in P. aeruginosa virulence towards C. elegans to provide evolutionary insights into host-pathogen relationships.

resultsNatural isolates of P. aeruginosa that exhibit diverse genomes display a broad range of virulence towards C. elegans. Using gene association and genetic analysis, we identify accessory genome elements that correlate with virulence, including both known and novel virulence determinants. Among the novel genes, we find a viral-like mobile element, the teg block, that impairs virulence and whose acquisition is restricted by CRISPR-Cas systems. Further genetic and genomic evidence suggests that spacer-targeted elements preferentially associate with lower virulence while the presence of CRISPR-Cas associates with higher virulence.

conclusionsOur analysis demonstrates substantial strain variation in P. aeruginosa virulence, mediated by specific accessory genome elements that promote increased or decreased virulence. We exemplify that viral-like accessory genome elements that decrease virulence can be restricted by bacterial CRISPR-Cas immune defense systems, and suggest a positive, albeit indirect, role for host CRISPR-Cas systems in virulence maintenance.

Indexed as

AnimalsCaenorhabditis elegansCRISPR-Cas SystemsGenome, BacterialHost-Pathogen InteractionsInterspersed Repetitive SequencesPseudomonas aeruginosaAccessory genomeC. elegansCRISPR-CasP. aeruginosaVirulence

Identifiers

PMID31823826
PMCPMC6902481
OpenAlexW2996648374

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.