Evidence map›Paper›PMID 31823814›Full record

ArticleBMC research notes2019

The mitochondrial transcriptome of the anglerfish Lophius piscatorius.

Arseny Dubin, Tor Erik Jørgensen, Lars Martin Jakt, Steinar Daae Johansen

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Arseny DubinGenomics Group, Faculty of Biosciences and Aquaculture, Nord University, 8049, Bodø, Norway.
Tor Erik JørgensenGenomics Group, Faculty of Biosciences and Aquaculture, Nord University, 8049, Bodø, Norway.
Lars Martin JaktGenomics Group, Faculty of Biosciences and Aquaculture, Nord University, 8049, Bodø, Norway.
Steinar Daae JohansenGenomics Group, Faculty of Biosciences and Aquaculture, Nord University, 8049, Bodø, Norway. steinar.d.johansen@nord.no.
Nord University · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveAnalyze key features of the anglerfish Lophius piscatorius mitochondrial transcriptome based on high-throughput total RNA sequencing.

resultsWe determined the complete mitochondrial DNA and corresponding transcriptome sequences of L. piscatorius. Key features include highly abundant mitochondrial ribosomal RNAs (10-100 times that of mRNAs), and that cytochrome oxidase mRNAs appeared > 5 times more abundant than both NADH dehydrogenase and ATPase mRNAs. Unusual for a vertebrate mitochondrial mRNA, the polyadenylated COI mRNA was found to harbor a 75 nucleotide 3' untranslated region. The mitochondrial genome expressed several non-canonical genes, including the long noncoding RNAs lncCR-H, lncCR-L and lncCOI. Whereas lncCR-H and lncCR-L mapped to opposite strands in a non-overlapping organization within the control region, lncCOI appeared novel among vertebrates. We found lncCOI to be a highly abundant mitochondrial RNA in antisense to the COI mRNA. Finally, we present the coding potential of a humanin-like peptide within the large subunit ribosomal RNA.

Indexed as

Adenosine TriphosphatasesAnimalsDNA, MitochondrialElectron Transport Complex IVFishesGenome, MitochondrialHigh-Throughput Nucleotide SequencingIntracellular Signaling Peptides and ProteinsMitochondriaNADH DehydrogenasePhylogenyRNA, AntisenseRNA, Long NoncodingRNA, MessengerRNA, MitochondrialRNA, RibosomalAdenosine TriphosphatasesDNA, MitochondrialElectron Transport Complex IVhumaninIntracellular Signaling Peptides and ProteinsNADH DehydrogenaseRNA, AntisenseRNA, Long NoncodingRNA, MessengerRNA, MitochondrialRNA, RibosomalAnglerfishAntisense RNAHumaninlncCOILong noncoding RNAMitogenomemtDNA

Identifiers

PMID31823814
PMCPMC6905026
OpenAlexW2996264252

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.