Evidence map›Paper›PMID 31823777›Full record

ArticleBMC infectious diseases2019

Comparison of an in house and a commercial real-time polymerase chain reaction targeting Toxoplasma gondii RE gene using various samples collected from patients in Turkey.

Mert Döşkaya, Hüsnü Pullukçu, Muhammet Karakavuk, Esra Atalay Şahar, Mehmet Sezai Taşbakan, Meltem Işıkgöz Taşbakan, Mümtaz Yılmaz, Hüseyin Can, Aysu Değirmenci Döşkaya, Adnan Yüksel Gürüz

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Mert DöşkayaDepartment of Parasitology, Ege University Faculty of Medicine, 35100, İzmir, Bornova, Turkey.
Hüsnü PullukçuDepartment of Infectious Diseases, Ege University Faculty of Medicine, İzmir, Bornova, Turkey.
Muhammet KarakavukDepartment of Parasitology, Ege University Faculty of Medicine, 35100, İzmir, Bornova, Turkey.
Esra Atalay ŞaharDepartment of Parasitology, Ege University Faculty of Medicine, 35100, İzmir, Bornova, Turkey.
Mehmet Sezai TaşbakanDepartment of Chest Diseases, Ege University Faculty of Medicine, İzmir, Bornova, Turkey.
Meltem Işıkgöz TaşbakanDepartment of Infectious Diseases, Ege University Faculty of Medicine, İzmir, Bornova, Turkey.
Mümtaz YılmazDepartment of Internal Medicine, Ege University Faculty of Medicine, İzmir, Bornova, Turkey.
Hüseyin CanDepartment of Biology, Molecular Biology Section, Ege University Faculty of Sciences, İzmir, Bornova, Turkey.
Aysu Değirmenci DöşkayaDepartment of Parasitology, Ege University Faculty of Medicine, 35100, İzmir, Bornova, Turkey. aysu.degirmenci.doskaya@ege.edu.tr.ORCID http://orcid.org/0000-0003-0363-9099
Adnan Yüksel GürüzDepartment of Parasitology, Ege University Faculty of Medicine, 35100, İzmir, Bornova, Turkey.
Ege University · TR

Funding

Ege Üniversitesi 2013TIP050
6 · The paper itself

Abstract

backgroundToxoplasma gondii is an opportunistic protozoan parasite that can infect all warm-blooded animals including humans and cause serious clinical manifestations. Toxoplasmosis can be diagnosed using histological, serological, and molecular methods. In this study, we aimed to detect T. gondii RE gene in various human samples by in house and commercial real time polymerase chain reactions.

methodsA total of 38 suspected cases of toxoplasmosis [peripheral blood (n:12), amnion fluid (n:11), tissue (n:9), cerebrospinal fluid (n:5), and intraocular fluid (n:1)] were included to the study. An in house and a commercial RT-PCR were applied to investigate the T. gondii RE gene in these samples.

resultsThe compatibility rate of the two tests was 94.7% (37/38). When the commercial RT-PCR kit was taken as reference, the sensitivity and specificity of in house RT-PCR test was 87.5 and 100%. When the in house RT-PCR test was taken as reference, the commercial RT-PCR kit has 100% sensitivity and 96.8% specificity. Incompatibility was detected in only in a buffy coat sample with high protein content.

conclusionsBoth the commercial and in house RT-PCR tests can be used to investigate T. gondii RE gene in various clinical specimens with their high sensitivity and specificity. In house RT-PCR assay can be favorable due to cost savings compared to using the commercial test.

Indexed as

Amniotic FluidAnimalsBlood Buffy CoatDNA, ProtozoanHumansMaleReagent Kits, DiagnosticReal-Time Polymerase Chain ReactionToxoplasmaToxoplasmosisTurkeyDNA, ProtozoanReagent Kits, DiagnosticDiagnosisIn houseReal time PCRRE geneToxoplasma gondii

Identifiers

PMID31823777
PMCPMC6902542
OpenAlexW2994953248

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.