Evidence map›Paper›PMID 31823726›Full record

ArticleBMC genomics2019

miR-380-3p regulates melanogenesis by targeting SOX6 in melanocytes from alpacas (Vicugna pacos).

Xuexian Liu, Bin Du, Pengqian Zhang, Junzhen Zhang, Zhiwei Zhu, Bo Liu, Ruiwen Fan

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

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  11. microRNAs in the Regulation of Melanogenesis.International journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xuexian LiuCollege of Animal Science and Veterinary Medicine, Shanxi Agricultural University, Mingxian South Road, Taigu, China.
Bin DuCollege of Animal Science and Veterinary Medicine, Shanxi Agricultural University, Mingxian South Road, Taigu, China.
Pengqian ZhangDepartment of Ecology Research, Beijing Milu Ecological Research Center, Nanhaizi, Daxing district, Beijing, China.
Junzhen ZhangCollege of Animal Science and Veterinary Medicine, Shanxi Agricultural University, Mingxian South Road, Taigu, China.
Zhiwei ZhuCollege of Life Science, Shanxi Agricultural University, Taigu, China.
Bo LiuCollege of Animal Science and Veterinary Medicine, Shanxi Agricultural University, Mingxian South Road, Taigu, China.
Ruiwen FanCollege of Animal Science and Veterinary Medicine, Shanxi Agricultural University, Mingxian South Road, Taigu, China. ruiwenfan@163.com.ORCID http://orcid.org/0000-0001-7186-8323
Shanxi Agricultural University · CNBeijing Municipal Ecological and Environmental Monitoring Center · CN

Funding

the Aid Program for Innovation Research Team at Shanxi Agricultural University CXTD201202the Young Sanjin Scholars Distinguished Professor program No
6 · The paper itself

Abstract

backgroundMelanocytes are derived from neural crest stem cells in the embryonic stage. In mature melanocytes, a series of complex enzyme-catalyzed reactions leads to the production of melanins, which determine the hair and skin colors of animals. The process of melanogenesis is complex and can be regulated by mRNA, microRNAs (miRNAs) and long noncoding RNAs (lncRNAs) genes. MiRNAs are a type of endogenous noncoding RNA approximately 22 nt in size that predominantly regulate gene expression by inhibiting translation. miR-380-3p is a candidate miRNA potentially related to melanogenesis. To better understand the mechanism of miR-380-3p melanogenesis regulation, plasmids to overexpress or knockdown miR-380-3p were transfected into alpaca melanocytes, and their effects on melanogenesis were evaluated.

resultsIn situ hybridization identified a positive miR-380-3p signal in alpaca melanocyte cytoplasm. Luciferase activity assays confirmed that SOX6 is targeted by miR-380-3p. miR-380-3p overexpression and knockdown in alpaca melanocytes respectively downregulated and upregulated SOX6 expression at the mRNA and protein levels. Additionally, miR-380-3p overexpression and knockdown, respectively, in alpaca melanocytes decreased and increased the mRNA levels of melanin transfer-related genes, including microphthalmia-associated transcription factor (MITF), tyrosinase (TYR), tyrosine-related protein-1 (TYRP1), and dopachrome tautomerase (DCT). In contrast, miR-380-3p overexpression and knockdown respectively increased and decreased the mRNA levels of β-catenin. Additionally, the effect of miR-380-3p on melanogenesis was assessed by Masson-Fontana melanin staining.

conclusionsThe results demonstrated that miR-380-3p targeted SOX6 to regulate melanogenesis by influencing β-catenin and MITF transcription and translation, which reduced the expression of downstream genes, including TYR, TYRP1, and DCT. These results provide insights into the mechanisms through which miR-380-3p controls melanogenesis.

Indexed as

3' Untranslated RegionsAnimalsbeta CateninCamelids, New WorldCells, CulturedGene ExpressionGene Expression RegulationGene Knockdown TechniquesIntramolecular OxidoreductasesMaleMelaninsMelanocytesMicrophthalmia-Associated Transcription FactorMicroRNAsMonophenol MonooxygenaseOxidoreductases3' Untranslated Regionsbeta Catenindopachrome isomeraseIntramolecular OxidoreductasesMelaninsMicrophthalmia-Associated Transcription FactorMicroRNAsMonophenol MonooxygenaseOxidoreductasesSOXD Transcription Factorstyrosinase-related protein-1Dopachrome tautomeraseMelanogenesisMicrophthalmia-associated transcription factormicroRNA-380-3pSex-determining region Y-box 6TyrosinaseTyrosine-related protein-1

Identifiers

PMID31823726
PMCPMC6905097
OpenAlexW2996318824

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.