Evidence map›Paper›PMID 31822930›Full record

ArticleArchives of toxicology2020

Concentration-response evaluation of ToxCast compounds for multivariate activity patterns of neural network function.

Marissa B Kosnik, Jenna D Strickland, Skylar W Marvel, Dylan J Wallis, Kathleen Wallace, Ann M Richard, David M Reif, Timothy J Shafer

Abstract read
In one paragraph

Article in Archives of toxicology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Identifying environmental chemicals impacting neurodevelopment using a random mixture-based screening approach.Toxicological sciences : an official journal of the Society of Toxicology · 2025
    Article
  2. Article
  3. Bioactivity of the ubiquitous tire preservative 6PPD and degradant, 6PPD-quinone in fish- and mammalian-based assays.Toxicological sciences : an official journal of the Society of Toxicology · 2025
    Article
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  16. Integrating Data From In Vitro New Approach Methodologies for Developmental Neurotoxicity.Toxicological sciences : an official journal of the Society of Toxicology · 2022
    Article
  17. Article
  18. Predictive modeling of biological responses in the rat liver usingComputational toxicology (Amsterdam, Netherlands) · 2021
    Article
  19. Article
  20. Comparison of Acute Effects of Neurotoxic Compounds on Network Activity in Human and Rodent Neural Cultures.Toxicological sciences : an official journal of the Society of Toxicology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marissa B KosnikDepartment of Biological Sciences, North Carolina State University, Raleigh, NC, USA.
Jenna D StricklandAxion Biosystems, Atlanta, GA, USA.
Skylar W MarvelDepartment of Biological Sciences, North Carolina State University, Raleigh, NC, USA.
Dylan J WallisDepartment of Biological Sciences, North Carolina State University, Raleigh, NC, USA.
Kathleen WallaceCenter for Computational Toxicology and Exposure, Office of Research and Development, US Environmental Protection Agency, MD B105-05, Research Triangle Park, NC, 27711, USA.
Ann M RichardCenter for Computational Toxicology and Exposure, Office of Research and Development, US Environmental Protection Agency, MD B105-05, Research Triangle Park, NC, 27711, USA.
David M ReifDepartment of Biological Sciences, North Carolina State University, Raleigh, NC, USA.
Timothy J ShaferCenter for Computational Toxicology and Exposure, Office of Research and Development, US Environmental Protection Agency, MD B105-05, Research Triangle Park, NC, 27711, USA. shafer.tim@epa.gov.ORCID http://orcid.org/0000-0002-8069-9987

Funding

Translational Research Support CoreP30ES025128 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI Sue Fenton · 2015 to 2026
$18.3M
Gene-Environment Interactions Causing Differential Susceptibility to Chemical Exposure in High-Throughput ScreeningR56ES030007 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI REIF, DAVID M · 2019 to 2019
$225k
EPA R835802NIEHS NIH HHS P30 ES025128NIEHS NIH HHS R56 ES030007
6 · The paper itself

Abstract

The US Environmental Protection Agency's ToxCast program has generated toxicity data for thousands of chemicals but does not adequately assess potential neurotoxicity. Networks of neurons grown on microelectrode arrays (MEAs) offer an efficient approach to screen compounds for neuroactivity and distinguish between compound effects on firing, bursting, and connectivity patterns. Previously, single concentrations of the ToxCast Phase II library were screened for effects on mean firing rate (MFR) in rat primary cortical networks. Here, we expand this approach by retesting 384 of those compounds (including 222 active in the previous screen) in concentration-response across 43 network activity parameters to evaluate neural network function. Using hierarchical clustering and machine learning methods on the full suite of chemical-parameter response data, we identified 15 network activity parameters crucial in characterizing activity of 237 compounds that were response actives ("hits"). Recognized neurotoxic compounds in this network function assay were often more potent compared to other ToxCast assays. Of these chemical-parameter responses, we identified three k-means clusters of chemical-parameter activity (i.e., multivariate MEA response patterns). Next, we evaluated the MEA clusters for enrichment of chemical features using a subset of ToxPrint chemotypes, revealing chemical structural features that distinguished the MEA clusters. Finally, we assessed distribution of neurotoxicants with known pharmacology within the clusters and found that compounds segregated differentially. Collectively, these results demonstrate that multivariate MEA activity patterns can efficiently screen for diverse chemical activities relevant to neurotoxicity, and that response patterns may have predictive value related to chemical structural features.

Indexed as

Databases, ChemicalDose-Response Relationship, DrugAnimalsCell Culture TechniquesDrug Evaluation, PreclinicalMachine LearningMicroelectrodesNerve NetNeural Networks, ComputerNeuronsNeurotoxicity SyndromesRats, Long-EvansToxicity TestsNeurotoxicityScreeningToxCast

Identifiers

PMID31822930
PMCPMC7371233

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.