Evidence map›Paper›PMID 31822799›Full record

ArticleOncogene2020

Systematic characterization of chromatin modifying enzymes identifies KDM3B as a critical regulator in castration resistant prostate cancer.

Hilal Saraç, Tunç Morova, Elisabete Pires, James McCullagh, Anıl Kaplan, Ahmet Cingöz, Tugba Bagci-Onder, Tamer Önder, Akane Kawamura, Nathan A Lack

Open access · hybridAbstract read
In one paragraph

Article in Oncogene, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

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  17. Epigenetic (De)regulation in Prostate Cancer.Cancer treatment and research · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Hilal SaraçSchool of Medicine, Koç University, Istanbul, 34450, Turkey.
Tunç MorovaSchool of Medicine, Koç University, Istanbul, 34450, Turkey.
Elisabete PiresChemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3TA, UK.
James McCullaghChemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3TA, UK.
Anıl KaplanSchool of Medicine, Koç University, Istanbul, 34450, Turkey.
Ahmet CingözSchool of Medicine, Koç University, Istanbul, 34450, Turkey.ORCID http://orcid.org/0000-0002-1111-7752
Tugba Bagci-OnderSchool of Medicine, Koç University, Istanbul, 34450, Turkey.ORCID http://orcid.org/0000-0003-3646-2613
Tamer ÖnderSchool of Medicine, Koç University, Istanbul, 34450, Turkey.ORCID http://orcid.org/0000-0002-2372-9158
Akane KawamuraChemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3TA, UK.ORCID http://orcid.org/0000-0003-1169-5082
Nathan A LackSchool of Medicine, Koç University, Istanbul, 34450, Turkey. nlack@ku.edu.tr.
Koç University · TRCentre for Human Genetics · GBUniversity of Oxford · GB

Funding

Cancer Research UK 18245Cancer Research UK 28285Cancer Research UK C8717/A18245Wellcome TrustWellcome Trust 203141/Z/16/Z
6 · The paper itself

Abstract

Androgen deprivation therapy (ADT) is the standard care for prostate cancer (PCa) patients who fail surgery or radiotherapy. While initially effective, the cancer almost always recurs as a more aggressive castration resistant prostate cancer (CRPC). Previous studies have demonstrated that chromatin modifying enzymes can play a critical role in the conversion to CRPC. However, only a handful of these potential pharmacological targets have been tested. Therefore, in this study, we conducted a focused shRNA screen of chromatin modifying enzymes previously shown to be involved in cellular differentiation. We found that altering the balance between histone methylation and demethylation impacted growth and proliferation. Of all genes tested, KDM3B, a histone H3K9 demethylase, was found to have the most antiproliferative effect. These results were phenocopied with a KDM3B CRISPR/Cas9 knockout. When tested in several PCa cell lines, the decrease in proliferation was remarkably specific to androgen-independent cells. Genetic rescue experiments showed that only the enzymatically active KDM3B could recover the phenotype. Surprisingly, despite the decreased proliferation of androgen-independent cell no alterations in the cell cycle distribution were observed following KDM3B knockdown. Whole transcriptome analyses revealed changes in the gene expression profile following loss of KDM3B, including downregulation of metabolic enzymes such as ARG2 and RDH11. Metabolomic analysis of KDM3B knockout showed a decrease in several critical amino acids. Overall, our work reveals, for the first time, the specificity and the dependence of KDM3B in CRPC proliferation.

Indexed as

Gene Expression Regulation, NeoplasticProtein Processing, Post-TranslationalArginaseCell Line, TumorGene Expression ProfilingHistone CodeHistonesHumansJumonji Domain-Containing Histone DemethylasesMaleMethylationOxidoreductasesPC-3 CellsProstatic Neoplasms, Castration-ResistantARG2 protein, humanArginaseHistonesJumonji Domain-Containing Histone DemethylasesKDM3B protein, humanOxidoreductasesRDH11 protein, human

Identifiers

PMID31822799
PMCPMC7056651
OpenAlexW2996247621

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.