Evidence map›Paper›PMID 31822760›Full record

ArticleScientific reports2019

Genome wide association study of 5 agronomic traits in olive (Olea europaea L.).

Hilal Betul Kaya, Deniz Akdemir, Roberto Lozano, Oznur Cetin, Hulya Sozer Kaya, Mustafa Sahin, Jenny L Smith, Bahattin Tanyolac, Jean-Luc Jannink

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Genetic and Cyto-Histological Analyses inInternational journal of molecular sciences · 2025
    Article
  4. Genotypic Effect on Olive (Plants (Basel, Switzerland) · 2025
    Article
  5. Genetic markers of olive fruit weight selected to be used in breeding experiments.Molecular breeding : new strategies in plant improvement · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Evaluation of genetic diversity among olive trees (Frontiers in plant science · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hilal Betul KayaDepartment of Bioengineering, Faculty of Engineering, Manisa Celal Bayar University, Manisa, Turkey. hilalbetul.kaya@cbu.edu.tr.
Deniz AkdemirCornell Statistical Consulting Unit, Cornell University, Ithaca, NY, USA.
Roberto LozanoSchool of Integrative Plant Science, Plant Breeding and Genetics Section, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0003-0760-4977
Oznur CetinOlive Research Institute, Izmir, Turkey.
Hulya Sozer KayaOlive Research Institute, Izmir, Turkey.
Mustafa SahinOlive Research Institute, Izmir, Turkey.
Jenny L SmithNational Clonal Germplasm Repository, USDA-ARS, One Shields Avenue, Davis, CA, USA.
Bahattin TanyolacDepartment of Bioengineering, Faculty of Engineering, Ege University, Bornova, Izmir, Turkey.
Jean-Luc JanninkSchool of Integrative Plant Science, Plant Breeding and Genetics Section, Cornell University, Ithaca, NY, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Olive (Olea europaea L.) is one of the most economically and historically important fruit crops worldwide. Genetic progress for valuable agronomic traits has been slow in olive despite its importance and benefits. Advances in next generation sequencing technologies provide inexpensive and highly reproducible genotyping approaches such as Genotyping by Sequencing, enabling genome wide association study (GWAS). Here we present the first comprehensive GWAS study on olive using GBS. A total of 183 accessions (FULL panel) were genotyped using GBS, 94 from the Turkish Olive GenBank Resource (TOGR panel) and 89 from the USDA-ARS National Clonal Germplasm Repository (NCGR panel) in the USA. After filtering low quality and redundant markers, GWAS was conducted using 24,977 SNPs in FULL, TOGR and NCGR panels. In total, 52 significant associations were detected for leaf length, fruit weight, stone weight and fruit flesh to pit ratio using the MLM_K. Significant GWAS hits were mapped to their positions and 19 candidate genes were identified within a 10-kb distance of the most significant SNP. Our findings provide a framework for the development of markers and identification of candidate genes that could be used in olive breeding programs.

Indexed as

Plant BreedingQuantitative Trait LociChromosome MappingCrops, AgriculturalGenetic MarkersGenome, PlantGenome-Wide Association StudyMicrosatellite RepeatsOleaPolymorphism, Single NucleotideSeed BankTurkeyUnited StatesGenetic Markers

Identifiers

PMID31822760
PMCPMC6904458

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.