Evidence map›Paper›PMID 31822727›Full record

ArticleScientific reports2019

Co-incidence of RCC-susceptibility polymorphisms with HIF cis-acting sequences supports a pathway tuning model of cancer.

Virginia Schmid, Veronique N Lafleur, Olivia Lombardi, Ran Li, Rafik Salama, Leandro Colli, Hani Choudhry, Stephen Chanock, Peter J Ratcliffe, David R Mole

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. HIF2 Inactivation and Tumor Suppression with a Tumor-Directed RNA-Silencing Drug in Mice and Humans.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Article
  11. Article
  12. Review
  13. Hypoxic Regulation of Gene Transcription and Chromatin: Cause and Effect.International journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Virginia SchmidLudwig Institute for Cancer Research, University of Oxford, Old Road Campus, Headington, Oxford, OX3 7FZ, United Kingdom.
Veronique N LafleurNDM Research Building, University of Oxford, Old Road Campus, Headington, Oxford, OX3 7FZ, United Kingdom.
Olivia LombardiNDM Research Building, University of Oxford, Old Road Campus, Headington, Oxford, OX3 7FZ, United Kingdom.ORCID http://orcid.org/0000-0002-2376-4092
Ran LiNDM Research Building, University of Oxford, Old Road Campus, Headington, Oxford, OX3 7FZ, United Kingdom.ORCID http://orcid.org/0000-0003-4095-424X
Rafik SalamaNDM Research Building, University of Oxford, Old Road Campus, Headington, Oxford, OX3 7FZ, United Kingdom.
Leandro ColliDivision of Cancer Epidemiology and Genetics, room 7E412, MSC 9776, National Cancer Institute, 9609 Medical Center Drive, Bethesda, MD, 20892-9776, USA.
Hani ChoudhryDepartment of Biochemistry, Faculty of Science, Center of Innovation in Personalized Medicine, King Fahd Center for Medical Research, King Abdulaziz University, Jeddah, Saudi Arabia.
Stephen ChanockDivision of Cancer Epidemiology and Genetics, room 7E412, MSC 9776, National Cancer Institute, 9609 Medical Center Drive, Bethesda, MD, 20892-9776, USA.
Peter J RatcliffeLudwig Institute for Cancer Research, University of Oxford, Old Road Campus, Headington, Oxford, OX3 7FZ, United Kingdom. peter.ratcliffe@ndm.ox.ac.uk.ORCID http://orcid.org/0000-0002-2853-806X
David R MoleNDM Research Building, University of Oxford, Old Road Campus, Headington, Oxford, OX3 7FZ, United Kingdom. david.mole@ndm.ox.ac.uk.ORCID http://orcid.org/0000-0002-0984-300X
University of Oxford · GBNational Cancer Institute · USJohn Radcliffe Hospital · GBKing Abdulaziz University · SAThe Francis Crick Institute · GB

Funding

British Heart Foundation RG/11/1/28684Cancer Research UK 16016Cancer Research UK A416016Cancer Research UK FC001501Department of Health RP-2015-06-004Medical Research Council FC001501Wellcome Trust 106241/Z/14/ZWellcome Trust 203141/Z/16/ZWellcome Trust FC001501
6 · The paper itself

Abstract

Emerging evidence suggests that dysregulation of oncogenic pathways requires precise tuning in order for cancer to develop. To test this, we examined the overlap between cis-acting elements of the hypoxia-inducible factor (HIF) pathway and cancer-susceptibility polymorphisms as defined in genome-wide association studies (GWAS). In renal cancer, where HIF is constitutively and un-physiologically activated by mutation of the von Hippel-Lindau tumour suppressor, we observed marked excess overlap, which extended to potential susceptibility polymorphisms that are below the conventional threshold applied in GWAS. In contrast, in other cancers where HIF is upregulated by different mechanisms, including micro-environmental hypoxia, we observed no excess in overlap. Our findings support a 'pathway tuning' model of cancer, whereby precise modulation of multiple outputs of specific, activated pathways is important in oncogenesis. This implies that selective pressures to modulate such pathways operate during cancer development and should focus attempts to identify their nature and consequences.

Indexed as

Gene Expression Regulation, NeoplasticBasic Helix-Loop-Helix ProteinsCarcinogenesisCarcinoma, Renal CellCell Line, TumorDatasets as TopicEndothelial PAS Domain-Containing Protein 1Genetic Predisposition to DiseaseGenome-Wide Association StudyHumansHypoxia-Inducible Factor 1Kidney NeoplasmsMutationPolymorphism, Single NucleotideSignal TransductionVon Hippel-Lindau Tumor Suppressor ProteinBasic Helix-Loop-Helix ProteinsEndothelial PAS Domain-Containing Protein 1Hypoxia-Inducible Factor 1VHL protein, humanVon Hippel-Lindau Tumor Suppressor Protein

Identifiers

PMID31822727
PMCPMC6904466
OpenAlexW2995559480

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.