Evidence map›Paper›PMID 31822682›Full record

ArticleScientific reports2019

Genomic Landscape of Intramedullary Spinal Cord Gliomas.

Ming Zhang, Rajiv R Iyer, Tej D Azad, Qing Wang, Tomas Garzon-Muvdi, Joanna Wang, Ann Liu, Peter Burger, Charles Eberhart, Fausto J Rodriguez and 6 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04211974 (Genomic Landscape of Intramedullary Astrocytoma), which is not on this map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04211974 unknown statusnot on this map

Genomic Landscape of Intramedullary Astrocytoma

TypeobservationalSponsorXuanwu Hospital, BeijingRan2019 to 2023Enrolled50ConditionsSpinal Cord AstrocytomaArmswhole-exome sequencing
3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Astrocytomas of the spinal cord.Neuro-oncology advances · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Analyses of DNA Methylation Profiling in the Diagnosis of Intramedullary Astrocytomas.Journal of neuropathology and experimental neurology · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Ming ZhangLudwig Center for Cancer Genetics, Sidney Kimmel Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Rajiv R IyerDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Tej D AzadDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Qing WangLudwig Center for Cancer Genetics, Sidney Kimmel Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Tomas Garzon-MuvdiDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Joanna WangDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Ann LiuDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Peter BurgerDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Charles EberhartDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Fausto J RodriguezDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.ORCID http://orcid.org/0000-0001-8662-1219
Daniel M SciubbaDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Jean-Paul WolinskyDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Ziya GokaslanDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Mari L GrovesDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
George I JalloDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA. gjallo1@jhmi.edu.
Chetan BettegowdaLudwig Center for Cancer Genetics, Sidney Kimmel Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA. cbetteg1@jhmi.edu.
Johns Hopkins University · USNorthwestern University · US

Funding

Multi-analyte Approach for Earlier Detection of Cancers in Non Plasma BiofluidsU01CA230691 · NCI · JOHNS HOPKINS UNIVERSITY · PI Nishant Agrawal, CHETAN BETTEGOWDA · 2018 to 2026
$6.7M
Interrogating malignant gliomas using released tumor DNA in cerebrospinal fluidR37CA230400 · NCI · JOHNS HOPKINS UNIVERSITY · PI BETTEGOWDA, CHETAN · 2018 to 2024
$2.6M
(PQ 6) Exploiting Frequent Alterations in the PRC2 Complex to Distinguish Benign Neurofibromas from Malignant Peripheral Nerve Sheath TumorsR21CA208723 · NCI · JOHNS HOPKINS UNIVERSITY · PI BETTEGOWDA, CHETAN · 2016 to 2017
$391k
NCI NIH HHS R21 CA208723NCI NIH HHS R37 CA230400NCI NIH HHS U01 CA230691U.S. Department of Health & Human Services | National Institutes of Health (NIH) R21-CA208723U.S. Department of Health & Human Services | National Institutes of Health (NIH) R37-CA230400
6 · The paper itself

Abstract

Intramedullary spinal cord tumors (IMSCTs) are rare neoplasms that have limited treatment options and are associated with high rates of morbidity and mortality. To better understand the genetic basis of these tumors we performed whole exome sequencing on 45 tumors and matched germline DNA, including twenty-nine spinal cord ependymomas and sixteen astrocytomas. Though recurrent somatic mutations in IMSCTs were rare, we identified NF2 mutations in 15.7% of tumors (ependymoma, N = 7; astrocytoma, N = 1), RP1 mutations in 5.9% of tumors (ependymoma, N = 3), and ESX1 mutations in 5.9% of tumors (ependymoma, N = 3). We further identified copy number amplifications in CTU1 in 25% of myxopapillary ependymomas. Given the paucity of somatic driver mutations, we further performed whole-genome sequencing of 12 tumors (ependymoma, N = 9; astrocytoma, N = 3). Overall, we observed that IMSCTs with intracranial histologic counterparts (e.g. glioblastoma) did not harbor the canonical mutations associated with their intracranial counterparts. Our findings suggest that the origin of IMSCTs may be distinct from tumors arising within other compartments of the central nervous system and provides the framework to begin more biologically based therapeutic strategies.

Indexed as

AdolescentAdultAgedAstrocytomaEpendymomaExome SequencingFemaleGenomicsGlioblastomaGliomaHomeodomain ProteinsHumansMaleMicrotubule-Associated ProteinsMiddle AgedNeurofibromin 2ESX1 protein, humanHomeodomain ProteinsMicrotubule-Associated ProteinsNeurofibromin 2NF2 protein, humanRP1 protein, human

Identifiers

PMID31822682
PMCPMC6904446
OpenAlexW2995796940

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.