Evidence map›Paper›PMID 31822666›Full record

ArticleNature communications2019

TRPML1 links lysosomal calcium to autophagosome biogenesis through the activation of the CaMKKβ/VPS34 pathway.

A Scotto Rosato, S Montefusco, C Soldati, S Di Paola, A Capuozzo, J Monfregola, E Polishchuk, A Amabile, C Grimm, A Lombardo and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed, 3 pooled it
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 3 syntheses or guidelines pooled it, 180 citations in OpenAlex.

  1. Pooled it
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  14. Role of TRP channels in lymphatic function.Frontiers in physiology · 2026
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64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

A Scotto RosatoTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy.
S MontefuscoTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy.
C SoldatiTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy.
S Di PaolaTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy.ORCID http://orcid.org/0000-0003-3753-5722
A CapuozzoTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy.
J MonfregolaTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy.
E PolishchukTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy.
A AmabileTelethon Institute for Gene Therapy (SR-Tiget), Division of Regenerative Medicine, Stem Cells, and Gene Therapy, IRCCS San Raffaele Scientific Institute, Milan, Italy.
C GrimmFaculty of Medicine, Walther Straub Institute of Pharmacology and Toxicology, Ludwig-Maximilians-Universität, Munich, Germany.
A LombardoTelethon Institute for Gene Therapy (SR-Tiget), Division of Regenerative Medicine, Stem Cells, and Gene Therapy, IRCCS San Raffaele Scientific Institute, Milan, Italy.ORCID http://orcid.org/0000-0001-8262-042X
M A De MatteisTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy.ORCID http://orcid.org/0000-0003-0053-3061
A BallabioTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy.ORCID http://orcid.org/0000-0003-1381-4604
D L MedinaTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy. medina@tigem.it.ORCID http://orcid.org/0000-0002-7347-2645
Telethon Institute Of Genetics And Medicine · ITFederico II University Hospital · ITVita-Salute San Raffaele University · ITBaylor College of Medicine · USLudwig-Maximilians-Universität München · DE

Funding

MODULATION OF CELLULAR CLEARANCE TO TREAT HUMAN DISEASER01NS078072 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI BALLABIO, ANDREA · 2012 to 2020
$3.1M
NINDS NIH HHS R01 NS078072
6 · The paper itself

Abstract

The lysosomal calcium channel TRPML1, whose mutations cause the lysosomal storage disorder (LSD) mucolipidosis type IV (MLIV), contributes to upregulate autophagic genes by inducing the nuclear translocation of the transcription factor EB (TFEB). Here we show that TRPML1 activation also induces autophagic vesicle (AV) biogenesis through the generation of phosphatidylinositol 3-phosphate (PI3P) and the recruitment of essential PI3P-binding proteins to the nascent phagophore in a TFEB-independent manner. Thus, TRPML1 activation of phagophore formation requires the calcium-dependent kinase CaMKKβ and AMPK, which increase the activation of ULK1 and VPS34 autophagic protein complexes. Consistently, cells from MLIV patients show a reduced recruitment of PI3P-binding proteins to the phagophore during autophagy induction, suggesting that altered AV biogenesis is part of the pathological features of this disease. Together, we show that TRPML1 is a multistep regulator of autophagy that may be targeted for therapeutic purposes to treat LSDs and other autophagic disorders.

Indexed as

Signal TransductionAutophagosomesAutophagy-Related Protein-1 HomologBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBeclin-1CalciumCalcium-Calmodulin-Dependent Protein Kinase KinaseCell LineClass III Phosphatidylinositol 3-KinasesHumansIntracellular Signaling Peptides and ProteinsLysosomesModels, BiologicalMucolipidosesPhosphatidylinositol PhosphatesPhosphorylationAutophagy-Related Protein-1 HomologBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBeclin-1CalciumCalcium-Calmodulin-Dependent Protein Kinase KinaseClass III Phosphatidylinositol 3-KinasesIntracellular Signaling Peptides and ProteinsMCOLN1 protein, humanphosphatidylinositol 3-phosphatePhosphatidylinositol PhosphatesPhosphoserineTFEB protein, humanTransient Receptor Potential ChannelsULK1 protein, human

Identifiers

PMID31822666
PMCPMC6904751
OpenAlexW2994986787

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.