Evidence map›Paper›PMID 31822559›Full record

ArticleThe Journal of biological chemistry2020

Mechanism of activation for the sirtuin 6 protein deacylase.

Mark A Klein, Can Liu, Vyacheslav I Kuznetsov, John B Feltenberger, Weiping Tang, John M Denu

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Effects of Chemical Modulators on Enzyme Specificity.The journal of physical chemistry. B · 2026
    Article
  3. Article
  4. Structural and enzymatic plasticity of SIRT6 deacylase activity.The Journal of biological chemistry · 2025
    Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. DNA damage and repair in age-related inflammation.Nature reviews. Immunology · 2023
    Review
  10. Article
  11. Review
  12. Article
  13. Potent Activation of NADACS chemical biology · 2022
    Article
  14. Article
  15. Article
  16. SIRT6 regulates SREBP1c-induced glucolipid metabolism in liver and pancreas via the AMPKα-mTORC1 pathway.Laboratory investigation; a journal of technical methods and pathology · 2022
    Article
  17. Sirt6 regulates lifespan inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Review
  19. Review
  20. Emerging Therapeutic Potential of SIRT6 Modulators.Journal of medicinal chemistry · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mark A KleinWisconsin Institute for Discovery, University of Wisconsin-Madison, Wisconsin 53715.ORCID 0000-0002-6782-8502
Can LiuSchool of Pharmacy, University of Wisconsin-Madison, Wisconsin 53715.
Vyacheslav I KuznetsovWisconsin Institute for Discovery, University of Wisconsin-Madison, Wisconsin 53715.
John B FeltenbergerSchool of Pharmacy, Medicinal Chemistry Center, University of Wisconsin-Madison, Wisconsin 53715.
Weiping TangSchool of Pharmacy, University of Wisconsin-Madison, Wisconsin 53715.
John M DenuWisconsin Institute for Discovery, University of Wisconsin-Madison, Wisconsin 53715 john.denu@wisc.edu.

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Christian Capitini · 1985 to 2026
$142.6M
Chemistry-Biology Interface Training ProgramT32GM008505 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BLACKWELL, HELEN E. · 1993 to 2023
$9.8M
Reversible protein acetylation and sirtuin functionR01GM065386 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DENU, JOHN M · 2003 to 2022
$7.3M
NCI NIH HHS P30 CA014520NIGMS NIH HHS R01 GM065386NIGMS NIH HHS T32 GM008505
6 · The paper itself

Abstract

The histone deacetylase sirtuin 6 (SIRT6) regulates numerous biological functions, including transcriptional repression, DNA repair, and telomere maintenance. Recombinant SIRT6 displays catalytic efficiencies 2 orders of magnitude greater for long-chain deacylation than deacetylation against peptide substrates; however, deacetylation can be enhanced by allosteric small-molecule activators. Here, we investigated the mechanisms of activated lysine deacetylation and enhanced long-chain acyl-group removal by SIRT6. Activity-based screening identified compounds that activated histone peptide deacetylation 18-48-fold. Chemical optimization based on structure-activity relationships yielded an activator with improved potency and selectivity for SIRT6. Using this novel activator, we conducted biochemical and kinetic analyses revealing that SIRT6 is activated via acceleration of a catalytic step occurring after substrate binding but before NAD

Indexed as

Allosteric RegulationBiocatalysisFatty AcidsHEK293 CellsHistonesHumansHydrophobic and Hydrophilic InteractionsKineticsLipidsMutagenesisMutationNADPeptidesProtein BindingProtein ConformationSirtuinsFatty AcidsHistonesLipidsNADPeptidesSIRT6 protein, humanSirtuinsSmall Molecule Librariesactivatorcancerchromatindeacetylationepigeneticshistonehistone deacetylase (HDAC)lifespanlong chain acyl substratelongevitySIRT6sirtuin

Identifiers

PMID31822559
PMCPMC6996886

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.