Evidence map›Paper›PMID 31822280›Full record

SynthesisBMC medical genetics2019

Association of vitamin D receptor TaqI and ApaI genetic polymorphisms with nephrolithiasis and end stage renal disease: a meta-analysis.

Tajamul Hussain, Shaik M Naushad, Anwar Ahmed, Salman Alamery, Arif A Mohammed, Mohamed O Abdelkader, Nasser Abobakr Nasser Alkhrm

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in BMC medical genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. The role of TaqI, ApaI and BsmI polymorphisms of VDR gene in lumbar spine pathologies: systematic review and meta-analysis.European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society · 2021
    Pooled it
  2. Review
  3. Article
  4. Association of Vitamin D receptor gene polymorphisms and clinical/severe outcomes of COVID-19 patients.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Article
  5. Disease markers · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Tajamul HussainCenter of Excellence in Biotechnology Research, Department of Biochemistry, College of Science Building 5, King Saud University, Riyadh, 11451, Saudi Arabia. thussain@ksu.edu.sa.ORCID 0000-0002-6770-9108
Shaik M NaushadBiochemical Genetics, Sandor Life Sciences Pvt. Ltd, Hyderabad, India.
Anwar AhmedCenter of Excellence in Biotechnology Research, Department of Biochemistry, College of Science Building 5, King Saud University, Riyadh, 11451, Saudi Arabia.
Salman AlameryCenter of Excellence in Biotechnology Research, Department of Biochemistry, College of Science Building 5, King Saud University, Riyadh, 11451, Saudi Arabia.
Arif A MohammedCenter of Excellence in Biotechnology Research, Department of Biochemistry, College of Science Building 5, King Saud University, Riyadh, 11451, Saudi Arabia.
Mohamed O AbdelkaderDepartment of Biochemistry, College of Science, King Saud University, Riyadh, Saudi Arabia.
Nasser Abobakr Nasser AlkhrmDepartment of Biochemistry, College of Science, King Saud University, Riyadh, Saudi Arabia.
King Saud University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe deficiency of vitamin D receptor (VDR) or its ligand, vitamin D3, is linked to the development of renal diseases. The TaqI (rs731236) and ApaI (rs7975232) polymorphisms of VDR gene are widely studied for their association with renal disease risk. However, studies have largely been ambiguous.

methodsMeta-analysis was carried out to clarify the association of TaqI (2777 cases and 3522 controls) and ApaI (2440 cases and 3279 controls) polymorphisms with nephrolithiasis (NL), diabetic nephropathy (DN) and end stage renal disease (ESRD).

resultsThe VDR TaqI C-allele under allele contrast was significantly associated with ESRD in both fixed effect and random effect models, and ApaI C-allele with ESRD only under fixed effect model. Cochrane Q-test showed no evidence of heterogeneity for TaqI polymorphism and a significant heterogeneity for Apa I polymorphism. No publication bias was observed for both the polymorphisms.

conclusionsThe present meta-analysis identifies TaqI and ApaI polymorphisms of VDR gene as risk factors for renal diseases.

Indexed as

Polymorphism, Single NucleotideCase-Control StudiesDeoxyribonucleases, Type II Site-SpecificDiabetic NephropathiesHumansKidney Failure, ChronicNephrolithiasisReceptors, CalcitriolDeoxyribonucleases, Type II Site-SpecificGGGCCC-specific type II deoxyribonucleasesReceptors, CalcitriolTCGA-specific type II deoxyribonucleasesVDR protein, humanDiabetic nephropathyEnd stage renal diseaseMeta-analysisNephrolithiasisVitamin D receptor gene polymorphism

Identifiers

PMID31822280
PMCPMC6902508
OpenAlexW2996247894

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.