Evidence map›Paper›PMID 31822272›Full record

ArticleBMC bioinformatics2019

Predicting the artificial immunity induced by RUTI® vaccine against tuberculosis using universal immune system simulator (UISS).

Marzio Pennisi, Giulia Russo, Giuseppe Sgroi, Angela Bonaccorso, Giuseppe Alessandro Parasiliti Palumbo, Epifanio Fichera, Dipendra Kumar Mitra, Kenneth B Walker, Pere-Joan Cardona, Merce Amat and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC bioinformatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. HowVaccines · 2026
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  4. Characterizing the immune response toFrontiers in immunology · 2024
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  10. Verification of an agent-based disease model of human Mycobacterium tuberculosis infection.International journal for numerical methods in biomedical engineering · 2021
    Article
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  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 4 countries.

Marzio PennisiDepartment of Mathematics and Computer Science, University of Catania, 95125, Catania, Italy.
Giulia RussoDepartment of Drug Sciences, University of Catania, Italy, 95125, Catania, Italy.
Giuseppe SgroiDepartment of Mathematics and Computer Science, University of Catania, 95125, Catania, Italy.
Angela BonaccorsoDepartment of Drug Sciences, University of Catania, Italy, 95125, Catania, Italy.
Giuseppe Alessandro Parasiliti PalumboDepartment of Mathematics and Computer Science, University of Catania, 95125, Catania, Italy.
Epifanio FicheraEtna Biotech S.r.l., 95121, Catania, Italy.
Dipendra Kumar MitraDepartment of Transplant Immunology and Immunogenetics, All India Institute of Medical Sciences, New Delhi, 110029, India.
Kenneth B WalkerTuBerculosis Vaccine Initiative (TBVI), Lelystad, 8219, The Netherlands.
Pere-Joan CardonaArchivel Farma, S.L, 08916, Badalona, Spain.
Merce AmatArchivel Farma, S.L, 08916, Badalona, Spain.
Marco VicecontiDepartment of Industrial Engineering, Alma Mater Studiorum, University of Bologna, 40136, Bologna, Italy.
Francesco PappalardoDepartment of Drug Sciences, University of Catania, Italy, 95125, Catania, Italy. francesco.pappalardo@unict.it.
University of Catania · ITBadalona Serveis Assistencials · ESAll India Institute of Medical Sciences · INEtna Biotech (Italy) · ITTuBerculosis Vaccine Initiative · NLUniversity of Bologna · IT

Funding

H2020 Societal Challenges 777123
6 · The paper itself

Abstract

backgroundTuberculosis (TB) represents a worldwide cause of mortality (it infects one third of the world's population) affecting mostly developing countries, including India, and recently also developed ones due to the increased mobility of the world population and the evolution of different new bacterial strains capable to provoke multi-drug resistance phenomena. Currently, antitubercular drugs are unable to eradicate subpopulations of Mycobacterium tuberculosis (MTB) bacilli and therapeutic vaccinations have been postulated to overcome some of the critical issues related to the increase of drug-resistant forms and the difficult clinical and public health management of tuberculosis patients. The Horizon 2020 EC funded project "In Silico Trial for Tuberculosis Vaccine Development" (STriTuVaD) to support the identification of new therapeutic interventions against tuberculosis through novel in silico modelling of human immune responses to disease and vaccines, thereby drastically reduce the cost of clinical trials in this critical sector of public healthcare.

resultsWe present the application of the Universal Immune System Simulator (UISS) computational modeling infrastructure as a disease model for TB. The model is capable to simulate the main features and dynamics of the immune system activities i.e., the artificial immunity induced by RUTI® vaccine, a polyantigenic liposomal therapeutic vaccine made of fragments of Mycobacterium tuberculosis cells (FCMtb). Based on the available data coming from phase II Clinical Trial in subjects with latent tuberculosis infection treated with RUTI® and isoniazid, we generated simulation scenarios through validated data in order to tune UISS accordingly to STriTuVaD objectives. The first case simulates the establishment of MTB latent chronic infection with some typical granuloma formation; the second scenario deals with a reactivation phase during latent chronic infection; the third represents the latent chronic disease infection scenario during RUTI® vaccine administration.

conclusionsThe application of this computational modeling strategy helpfully contributes to simulate those mechanisms involved in the early stages and in the progression of tuberculosis infection and to predict how specific therapeutical strategies will act in this scenario. In view of these results, UISS owns the capacity to open the door for a prompt integration of in silico methods within the pipeline of clinical trials, supporting and guiding the testing of treatments in patients affected by tuberculosis.

Indexed as

Computer SimulationComputational BiologyHumansMycobacterium tuberculosisSoftwareTuberculosisTuberculosis VaccinesTuberculosis VaccinesComputational modeling frameworkImmunityIn silico clinical trialsTherapeutic strategiesTuberculosisVaccine

Identifiers

PMID31822272
PMCPMC6904993
OpenAlexW2994705677

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.