Evidence map›Paper›PMID 31820364›Full record

ArticleGeroScience2019

Automated lifespan determination across Caenorhabditis strains and species reveals assay-specific effects of chemical interventions.

Stephen A Banse, Mark Lucanic, Christine A Sedore, Anna L Coleman-Hulbert, W Todd Plummer, Esteban Chen, Jason L Kish, David Hall, Brian Onken, Michael P Presley and 21 more

Abstract read
In one paragraph

Article in GeroScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. microPublication biology · 2026
    Article
  3. microPublication biology · 2026
    Article
  4. Article
  5. Distribution Analysis of the Lifespan Trait in Drosophila.International journal of molecular sciences · 2025
    Article
  6. Review
  7. microPublication biology · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. A biphasic model of lifespan in nematodeRoyal Society open science · 2023
    Article
  14. Article
  15. Genetic diversity estimates for themicroPublication biology · 2022
    Article
  16. Article
  17. ApplyingFrontiers in aging · 2021
    Article
  18. Phenotypic Screening inPharmaceuticals (Basel, Switzerland) · 2020
    Review
  19. Plant and fungal products that extend lifespan inMicrobial cell (Graz, Austria) · 2020
    Review
  20. microPublication biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Stephen A BanseInstitute of Ecology and Evolution, University of Oregon, Eugene, OR, 97403, USA.ORCID http://orcid.org/0000-0002-5540-4526
Mark LucanicThe Buck Institute for Research on Aging, Novato, CA, 94945, USA.
Christine A SedoreInstitute of Ecology and Evolution, University of Oregon, Eugene, OR, 97403, USA.
Anna L Coleman-HulbertInstitute of Ecology and Evolution, University of Oregon, Eugene, OR, 97403, USA.
W Todd PlummerThe Buck Institute for Research on Aging, Novato, CA, 94945, USA.
Esteban ChenDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA.
Jason L KishThe Buck Institute for Research on Aging, Novato, CA, 94945, USA.
David HallThe Buck Institute for Research on Aging, Novato, CA, 94945, USA.
Brian OnkenDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA.
Michael P PresleyThe Buck Institute for Research on Aging, Novato, CA, 94945, USA.
E Grace JonesInstitute of Ecology and Evolution, University of Oregon, Eugene, OR, 97403, USA.
Benjamin W BlueInstitute of Ecology and Evolution, University of Oregon, Eugene, OR, 97403, USA.
Theo GarrettThe Buck Institute for Research on Aging, Novato, CA, 94945, USA.
Mark AbbottDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA.
Jian XueDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA.
Suzhen GuoDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA.
Erik JohnsonInstitute of Ecology and Evolution, University of Oregon, Eugene, OR, 97403, USA.
Anna C FoulgerThe Buck Institute for Research on Aging, Novato, CA, 94945, USA.
Manish ChamoliThe Buck Institute for Research on Aging, Novato, CA, 94945, USA.
Ron FalkowskiDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA.
Ilija MelentijevicDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA.
Girish HarinathDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA.
Phu HuynhDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA.
Shobhna PatelDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA.
Daniel EdgarThe Buck Institute for Research on Aging, Novato, CA, 94945, USA.
Cody M JarrettInstitute of Ecology and Evolution, University of Oregon, Eugene, OR, 97403, USA.
Max GuoDivision of Aging Biology, National Institute on Aging, Bethesda, MD, 20892-9205, USA.
Pankaj KapahiThe Buck Institute for Research on Aging, Novato, CA, 94945, USA.
Gordon J LithgowThe Buck Institute for Research on Aging, Novato, CA, 94945, USA. glithgow@buckinstitute.org.
Monica DriscollDepartment of Molecular Biology and Biochemistry, Nelson Biological Laboratories, Rutgers University, Piscataway, NJ, 08854, USA. driscoll@dls.rutgers.edu.
Patrick C PhillipsInstitute of Ecology and Evolution, University of Oregon, Eugene, OR, 97403, USA. pphil@uoregon.edu.

Funding

Discovering compounds with robust pro-longevity activitiesU01AG045844 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI Gordon J Lithgow · 2013 to 2026
$10.1M
Healthspan Analysis of C. elegans Strains Treated with Candidate Anti Aging InterU01AG045864 · NIA · RUTGERS, THE STATE UNIV OF N.J. · PI MONICA A. DRISCOLL · 2013 to 2026
$8.1M
Genetic variation underlying the response to longevity interventionsU01AG045829 · NIA · UNIVERSITY OF OREGON · PI Patrick C. Phillips · 2013 to 2026
$8.0M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Pharmacology of LIfespan ExtensionR01AG029631 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI LITHGOW, GORDON J · 2008 to 2018
$5.4M
Systems variation underlying the genetics of agingR01AG056436 · NIA · UNIVERSITY OF OREGON · PI LU, HANG, PHILLIPS, PATRICK C. · 2017 to 2021
$2.7M
Caenorhabditis Testing Program Data Coordinating CenterU24AG056052 · NIA · UNIVERSITY OF OREGON · PI Patrick C. Phillips · 2017 to 2026
$2.2M
Interdisciplinary Research Consortium in GeroscienceUL1RR024917 · NCRR · BUCK INSTITUTE FOR RESEARCH ON AGING · PI LITHGOW, GORDON J. · 2007 to 2007
$605k
Vitamin D Metabolism and Lifespan DeterminationR21AG048528 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI LITHGOW, GORDON J · 2014 to 2015
$526k
NCRR NIH HHS UL1 RR024917NIA NIH HHS R01 AG029631NIA NIH HHS R01 AG056436NIA NIH HHS R21 AG048528NIA NIH HHS U01 AG045829NIA NIH HHS U01 AG045844NIA NIH HHS U01 AG045864NIA NIH HHS U24 AG056052NIA NIH HHS UL1RR024917NIH HHS P40 OD010440
6 · The paper itself

Abstract

The goal of the Caenorhabditis Intervention Testing Program is to identify robust and reproducible pro-longevity interventions that are efficacious across genetically diverse cohorts in the Caenorhabditis genus. The project design features multiple experimental replicates collected by three different laboratories. Our initial effort employed fully manual survival assays. With an interest in increasing throughput, we explored automation with flatbed scanner-based Automated Lifespan Machines (ALMs). We used ALMs to measure survivorship of 22 Caenorhabditis strains spanning three species. Additionally, we tested five chemicals that we previously found extended lifespan in manual assays. Overall, we found similar sources of variation among trials for the ALM and our previous manual assays, verifying reproducibility of outcome. Survival assessment was generally consistent between the manual and the ALM assays, although we did observe radically contrasting results for certain compound interventions. We found that particular lifespan outcome differences could be attributed to protocol elements such as enhanced light exposure of specific compounds in the ALM, underscoring that differences in technical details can influence outcomes and therefore interpretation. Overall, we demonstrate that the ALMs effectively reproduce a large, conventionally scored dataset from a diverse test set, independently validating ALMs as a robust and reproducible approach toward aging-intervention screening.

Indexed as

AnimalsBiological AssayCaenorhabditis elegansKetoglutaric AcidsLasersLongevityPhotic StimulationKetoglutaric AcidsAutomationCaenorhabditis elegansCITPLifespanLifespan machineThioflavin T

Identifiers

PMID31820364
PMCPMC6925072

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.