Evidence map›Paper›PMID 31819272›Full record

ArticleNature chemical biology2020

Structural basis of indisulam-mediated RBM39 recruitment to DCAF15 E3 ligase complex.

Dirksen E Bussiere, Lili Xie, Honnappa Srinivas, Wei Shu, Ashley Burke, Celine Be, Junping Zhao, Adarsh Godbole, Dan King, Rajeshri G Karki and 17 more

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 110 papers.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 249 citations in OpenAlex.

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  12. Regulation of RNA-binding proteins by small biomolecules.Nature reviews. Molecular cell biology · 2026
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50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 4 institutions in 3 countries.

Dirksen E BussiereNovartis Institutes for Biomedical Research, Emeryville, CA, USA. dirksen.bussiere@novartis.com.ORCID http://orcid.org/0000-0002-5623-5648
Lili XieNovartis Institutes for Biomedical Research, Emeryville, CA, USA.ORCID http://orcid.org/0000-0001-7604-2037
Honnappa SrinivasNovartis Institutes for Biomedical Research, Basel, Switzerland.
Wei ShuNovartis Institutes for Biomedical Research, Emeryville, CA, USA.
Ashley BurkeNovartis Institutes for Biomedical Research, Cambridge, MA, USA.
Celine BeNovartis Institutes for Biomedical Research, Basel, Switzerland.
Junping ZhaoNovartis Institutes for Biomedical Research, Cambridge, MA, USA.
Adarsh GodboleNovartis Institutes for Biomedical Research, Cambridge, MA, USA.
Dan KingNovartis Institutes for Biomedical Research, Cambridge, MA, USA.
Rajeshri G KarkiNovartis Institutes for Biomedical Research, Cambridge, MA, USA.ORCID http://orcid.org/0000-0003-2210-5789
Viktor HornakNovartis Institutes for Biomedical Research, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-2344-9586
Fangmin XuNovartis Institutes for Biomedical Research, Cambridge, MA, USA.
Jennifer CobbNovartis Institutes for Biomedical Research, Cambridge, MA, USA.
Nathalie CarteNovartis Institutes for Biomedical Research, Basel, Switzerland.
Andreas O FrankNovartis Institutes for Biomedical Research, Emeryville, CA, USA.
Alexandra FrommletNovartis Institutes for Biomedical Research, Emeryville, CA, USA.ORCID http://orcid.org/0000-0003-2219-7361
Patrick GraffNovartis Institutes for Biomedical Research, Basel, Switzerland.
Mark KnappNovartis Institutes for Biomedical Research, Emeryville, CA, USA.
Aleem FazalNovartis Institutes for Biomedical Research, Cambridge, MA, USA.ORCID http://orcid.org/0000-0003-0643-0477
Barun OkramGenomics Institute of the Novartis Research Foundation, San Diego, CA, USA.
Songchun JiangGenomics Institute of the Novartis Research Foundation, San Diego, CA, USA.
Pierre-Yves MichellysGenomics Institute of the Novartis Research Foundation, San Diego, CA, USA.
Rohan BeckwithNovartis Institutes for Biomedical Research, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-6437-1087
Hans VosholNovartis Institutes for Biomedical Research, Basel, Switzerland.
Christian WiesmannNovartis Institutes for Biomedical Research, Basel, Switzerland.
Jonathan M SolomonNovartis Institutes for Biomedical Research, Cambridge, MA, USA. jonathan.solomon@novartis.com.ORCID http://orcid.org/0000-0002-4588-2751
Joshiawa PaulkNovartis Institutes for Biomedical Research, Cambridge, MA, USA. josh.paulk@novartis.com.ORCID http://orcid.org/0000-0002-6134-1840
Novartis (United States) · USNovartis (Switzerland) · CHGenomics Institute of the Novartis Research Foundation · USNovartis (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The anticancer agent indisulam inhibits cell proliferation by causing degradation of RBM39, an essential mRNA splicing factor. Indisulam promotes an interaction between RBM39 and the DCAF15 E3 ligase substrate receptor, leading to RBM39 ubiquitination and proteasome-mediated degradation. To delineate the precise mechanism by which indisulam mediates the DCAF15-RBM39 interaction, we solved the DCAF15-DDB1-DDA1-indisulam-RBM39(RRM2) complex structure to a resolution of 2.3 Å. DCAF15 has a distinct topology that embraces the RBM39(RRM2) domain largely via non-polar interactions, and indisulam binds between DCAF15 and RBM39(RRM2), coordinating additional interactions between the two proteins. Studies with RBM39 point mutants and indisulam analogs validated the structural model and defined the RBM39 α-helical degron motif. The degron is found only in RBM23 and RBM39, and only these proteins were detectably downregulated in indisulam-treated HCT116 cells. This work further explains how indisulam induces RBM39 degradation and defines the challenge of harnessing DCAF15 to degrade additional targets.

Indexed as

Amino Acid MotifsAntineoplastic AgentsCalorimetryCloning, MolecularFluorometryHCT116 CellsHEK293 CellsHumansImage Processing, Computer-AssistedIntracellular Signaling Peptides and ProteinsKineticsNuclear ProteinsPeptidesPoint MutationProtein BindingProtein Structure, QuaternaryAntineoplastic AgentsDCAF15 protein, humanHCC1 autoantigenIntracellular Signaling Peptides and ProteinsN-(3-chloro-7-indolyl)-1,4-benzenedisulphonamideNuclear ProteinsPeptidesProteomeRNA-Binding ProteinsRNA, Small InterferingSulfonamidesUbiquitin-Protein Ligases

Identifiers

PMID31819272
OpenAlexW2991853974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.