Evidence map›Paper›PMID 31819139›Full record

ArticleScientific reports2019

First identification of mammalian orthoreovirus type 3 by gut virome analysis in diarrheic child in Brazil.

Ulisses Alves Rosa, Geovani de Oliveira Ribeiro, Fabiola Villanova, Adriana Luchs, Flávio Augusto de Pádua Milagres, Shirley Vasconcelos Komninakis, Roozbeh Tahmasebi, Márcia Cristina Alves Brito Sayão Lobato, Rafael Brustulin, Rogério Togisaki das Chagas and 10 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Emerging Roles of Gut Virome in Pediatric Diseases.International journal of molecular sciences · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 4 countries.

Ulisses Alves RosaInstitute of Biological Sciences, Federal University of Para, Para, 66075-000, Brazil.
Geovani de Oliveira RibeiroInstitute of Biological Sciences, Federal University of Para, Para, 66075-000, Brazil.
Fabiola VillanovaInstitute of Biological Sciences, Federal University of Para, Para, 66075-000, Brazil.
Adriana LuchsEnteric Disease Laboratory, Virology Center, Adolfo Lutz Institute, Sao Paulo, 01246-000, Brazil.
Flávio Augusto de Pádua MilagresSecretary of Health of Tocantins, Tocantins, 77453-000, Brazil.
Shirley Vasconcelos KomninakisPostgraduate Program in Health Science, Faculty of Medicine of ABC, Santo André, 09060-870, Brazil.
Roozbeh TahmasebiInstituto de Medicina Tropical, Universidade de São Paulo, São Paulo, 05403-000, Brazil.
Márcia Cristina Alves Brito Sayão LobatoSecretary of Health of Tocantins, Tocantins, 77453-000, Brazil.
Rafael BrustulinSecretary of Health of Tocantins, Tocantins, 77453-000, Brazil.
Rogério Togisaki das ChagasSecretary of Health of Tocantins, Tocantins, 77453-000, Brazil.
Maria de Fátima Neves Dos Santos AbrãoSecretary of Health of Tocantins, Tocantins, 77453-000, Brazil.
Cassia Vitória de Deus Alves SoaresSecretary of Health of Tocantins, Tocantins, 77453-000, Brazil.
Rory J TinkerInstituto de Medicina Tropical, Universidade de São Paulo, São Paulo, 05403-000, Brazil.
Ramendra Pati PandeyCentre for Drug Design Discovery and Development (C4D), SRM University, Delhi-NCR, Rajiv Gandhi Education City, Sonepat, 131 029, Haryana, India.
V Samuel RajCentre for Drug Design Discovery and Development (C4D), SRM University, Delhi-NCR, Rajiv Gandhi Education City, Sonepat, 131 029, Haryana, India.
Ester Cerdeira SabinoInstituto de Medicina Tropical, Universidade de São Paulo, São Paulo, 05403-000, Brazil.
Xutao DengVitalant Research Institute, San Francisco, CA, 94143, USA.
Eric DelwartVitalant Research Institute, San Francisco, CA, 94143, USA.
Antonio Charlys da CostaInstituto de Medicina Tropical, Universidade de São Paulo, São Paulo, 05403-000, Brazil. charlysbr@yahoo.com.br.
Élcio LealInstitute of Biological Sciences, Federal University of Para, Para, 66075-000, Brazil. elcioleal@gmail.com.
Universidade do Tocantins · BRUniversidade Federal do Pará · BRInstituto de Medicina Avançada · BRSRM University · INVitalant · USInstituto Adolfo Lutz · BRUniversidade de São Paulo · BRUniversidade Federal de São Paulo · BRUniversidade Federal do Tocantins · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diarrhea remains one of the most common causes of deaths in children. Although many studies have investigated the prevalence of enteric pathogens around the globe some diarrheal episodes remain unexplained. It is possible that some yet-unidentified viral agents could be related to these cases of gastroenteritis. By using viral metagenomics techniques, we screened 251 fecal samples of children between 0.5 to 2.5-year-old with acute diarrhea not associated with common pathogens. These children live in rural areas and have different levels of contact with animals such as pigs, cows and bats. Here we report a complete genome of one mammalian orthoreovirus (MRV) type 3, denoted TO-151/BR, detected in a female child in the state of Tocantins (north of Brazil). Brazilian TO-151/BR strain was classified as MRV-3 based on S1 phylogeny and was closely related to porcine Asian strains. Phylogenetic analyses showed that other segments were more similar to MRV-3s of different geographic locations and hosts, including human and bats, highlighting genome reassortment and lack of host-specific barriers. This is the first report of MRV-3 in South America and a hypothesis of a silent long-term circulation of this virus in Brazil has been raised.

Indexed as

AnimalsBrazilCattleChild, PreschoolChiropteraDiarrheaGastroenteritisGastrointestinal MicrobiomeGenome, ViralGeographyHumansInfantIntestinesMammalian orthoreovirus 3MetagenomicsPhylogeny

Identifiers

PMID31819139
PMCPMC6901473
OpenAlexW2992979034

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.