Evidence map›Paper›PMID 31818245›Full record

ArticleBMC genomics2019

Genomic insights into mite phylogeny, fitness, development, and reproduction.

Yan-Xuan Zhang, Xia Chen, Jie-Ping Wang, Zhi-Qiang Zhang, Hui Wei, Hai-Yan Yu, Hong-Kun Zheng, Yong Chen, Li-Sheng Zhang, Jian-Zhen Lin and 6 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 47 citations in OpenAlex.

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  13. Assembly of a Draft Genome for the Mouse EctoparasiteJournal of the American Association for Laboratory Animal Science : JAALAS · 2023
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  14. Human follicular mites: Ectoparasites becoming symbionts.Molecular biology and evolution · 2022
    Article
  15. Circulative Transmission of Cileviruses inFrontiers in microbiology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Yan-Xuan ZhangResearch Center of Engineering and Technology of Natural Enemy Resource of Crop Pest in Fujian, Institute of Plant Protection, Fujian Academy of Agricultural Sciences, Fuzhou, 350003, People's Republic of China. xuan7616@sina.com.
Xia ChenResearch Center of Engineering and Technology of Natural Enemy Resource of Crop Pest in Fujian, Institute of Plant Protection, Fujian Academy of Agricultural Sciences, Fuzhou, 350003, People's Republic of China.
Jie-Ping WangAgricultural Bio-Resources Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, 350013, People's Republic of China. wangjieping2011@163.com.
Zhi-Qiang ZhangLandcare Research, Auckland and School of Biological Sciences, The University of Auckland, Auckland, New Zealand. ZhangZ@landcareresearch.co.nz.ORCID http://orcid.org/0000-0003-4172-0592
Hui WeiResearch Center of Engineering and Technology of Natural Enemy Resource of Crop Pest in Fujian, Institute of Plant Protection, Fujian Academy of Agricultural Sciences, Fuzhou, 350003, People's Republic of China.
Hai-Yan YuBiomarker Technologies Corporation, Beijing, 101300, People's Republic of China.
Hong-Kun ZhengBiomarker Technologies Corporation, Beijing, 101300, People's Republic of China. zhenghk@biomarker.com.cn.
Yong ChenResearch Center of Engineering and Technology of Natural Enemy Resource of Crop Pest in Fujian, Institute of Plant Protection, Fujian Academy of Agricultural Sciences, Fuzhou, 350003, People's Republic of China.
Li-Sheng ZhangInstitute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, People's Republic of China.
Jian-Zhen LinFujian Yanxuan Bio-preventing and Technology Biocontrol Corporation, Fuzhou, People's Republic of China.
Li SunResearch Center of Engineering and Technology of Natural Enemy Resource of Crop Pest in Fujian, Institute of Plant Protection, Fujian Academy of Agricultural Sciences, Fuzhou, 350003, People's Republic of China.
Dong-Yuan LiuBiomarker Technologies Corporation, Beijing, 101300, People's Republic of China.
Juan TangBiomarker Technologies Corporation, Beijing, 101300, People's Republic of China.
Yan LeiBiomarker Technologies Corporation, Beijing, 101300, People's Republic of China.
Xu-Ming LiBiomarker Technologies Corporation, Beijing, 101300, People's Republic of China.
Min LiuBiomarker Technologies Corporation, Beijing, 101300, People's Republic of China.
Biomarker Technologies (China) · CNInstitute of Plant Protection · CNFujian Academy of Agricultural Sciences · CNUniversity of Auckland · NZ

Funding

China Recruitment Program of Global Experts WQ20123500080Fujian Council Fund for Scientific Research in the Public Interest 2015R1024-3Fujian Province Agriculture Five New" Technology Projects 2018-5National Key R&D Program of China 2017YFD0201000National Natural Science Foundation of China 31301722Science and Technology Innovation Team of Fujian Academy of Agricultural Science STIT2017-2-2 and STIT2017-1-11
6 · The paper itself

Abstract

backgroundPredatory mites (Acari: Phytoseiidae) are the most important beneficial arthropods used in augmentative biological pest control of protected crops around the world. However, the genomes of mites are far less well understood than those of insects and the evolutionary relationships among mite and other chelicerate orders are contested, with the enigmatic origin of mites at one of the centres in discussion of the evolution of Arachnida.

resultsWe here report the 173 Mb nuclear genome (from 51.75 Gb pairs of Illumina reads) of the predatory mite, Neoseiulus cucumeris, a biocontrol agent against pests such as mites and thrips worldwide. We identified nearly 20.6 Mb (~ 11.93% of this genome) of repetitive sequences and annotated 18,735 protein-coding genes (a typical gene 2888 bp in size); the total length of protein-coding genes was about 50.55 Mb (29.2% of this assembly). About 37% (6981) of the genes are unique to N. cucumeris based on comparison with other arachnid genomes. Our phylogenomic analysis supported the monophyly of Acari, therefore rejecting the biphyletic origin of mites advocated by other studies based on limited gene fragments or few taxa in recent years. Our transcriptomic analyses of different life stages of N. cucumeris provide new insights into genes involved in its development. Putative genes involved in vitellogenesis, regulation of oviposition, sex determination, development of legs, signal perception, detoxification and stress-resistance, and innate immune systems are identified.

conclusionsOur genomics and developmental transcriptomics analyses of N. cucumeris provide invaluable resources for further research on the development, reproduction, and fitness of this economically important mite in particular and Arachnida in general.

Indexed as

AcariAdaptation, PhysiologicalAnimalsBiological Control AgentsEvolution, MolecularGenomeGenomicsImmunity, InnateLife Cycle StagesMitesPhylogenyRepetitive Sequences, Nucleic AcidReproductionSequence Analysis, DNASpecies SpecificityTranscriptomeBiological Control AgentsAcariDevelopmentEcologyEvolutionFeedingGenomeSex

Identifiers

PMID31818245
PMCPMC6902594
OpenAlexW2996069918

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.