Evidence map›Paper›PMID 31816670›Full record

ArticleMolecular genetics & genomic medicine2020

Prevalence of mutations in inherited retinal diseases: A comparison between the United States and India.

Sophia Yohe, Malaichamy Sivasankar, Anuprita Ghosh, Arkasubhra Ghosh, Jennifer Holle, Sakthivel Murugan, Ravi Gupta, Lisa A Schimmenti, Ramprasad Vedam, Bharat Thyagarajan

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Cone Rod Homeobox (Ophthalmic genetics · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Inherited retinal disorders: a genotype-phenotype correlation in an Indian cohort and the importance of genetic testing and genetic counselling.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2023
    Article
  9. Article
  10. Approach to inherited retinal diseases.Indian journal of ophthalmology · 2022
    Review
  11. Review
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Sophia YoheDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN.ORCID 0000-0003-2235-9930
Malaichamy SivasankarMedgenome Labs Ltd., Bangalore, India.
Anuprita GhoshNarayana Nethralaya, Bangalore, India.
Arkasubhra GhoshNarayana Nethralaya, Bangalore, India.
Jennifer HolleDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN.
Sakthivel MuruganMedgenome Labs Ltd., Bangalore, India.
Ravi GuptaNarayana Nethralaya, Bangalore, India.
Lisa A SchimmentiDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN.
Ramprasad VedamMedgenome Labs Ltd., Bangalore, India.ORCID 0000-0002-0379-6054
Bharat ThyagarajanDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN.
University of Minnesota · USNarayana Nethralaya · INSciGenom Labs (India) · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundStudies evaluating next-generation sequencing (NGS) for retinal disorders may not reflect clinical practice. We report results of retrospective analysis of patients referred for clinical testing at two institutions (US and India).

methodsThis retrospective study of 131 patients who underwent clinically validated targeted NGS or exome sequencing for a wide variety of clinical phenotypes categorized results into a definitive, indeterminate, or negative molecular diagnosis.

resultsA definitive molecular diagnosis (52%) was more common in the India cohort (62% vs. 39%, p = .009), while an indeterminate molecular diagnosis occurred only in the US cohort (12%). In the US cohort, a lower diagnostic rate in Hispanic, non-Caucasians (23%) was seen compared to Caucasians (57%). The India cohort had a high rate of homozygous variants (61%) and different frequency of genes involved compared to the US cohort.

conclusionDespite inherent limitations in clinical testing, the diagnostic rate across the two cohorts (52%) was similar to the 50%-65% diagnostic rate in the literature. However, the diagnostic rate was lower in the US cohort and appears partly explained by racial background. The high rate of consanguinity in the Indian population is reflected in the high rate of homozygosity for pathogenic mutations and may have implications for population level screening and genetic counseling. Clinical laboratories may note diagnostic rates that differ from the literature, due to factors such as heterogeneity in racial background or consanguinity rates in the populations being tested. This information may be useful for post-test counseling.

Indexed as

MutationAdolescentAdultChildChild, PreschoolFemaleGene FrequencyGenetic TestingHigh-Throughput Nucleotide SequencingHomozygoteHumansIndiaInfantMaleMiddle AgedRetinal Diseasesclinical testingmolecular diagnosisnext-generation sequencingracial disparityretinal disorders

Identifiers

PMID31816670
PMCPMC7005662
OpenAlexW2995233992

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.