Evidence map›Paper›PMID 31815141›Full record

ArticleBioMed research international2019

Identifying Mutually Exclusive Gene Sets with Prognostic Value and Novel Potential Driver Genes in Patients with Glioblastoma.

Qian Gao, Yan Cui, Yanan Shen, Yanyan Li, Xue Gao, Yanfeng Xi, Tong Wang

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Metabolic Rewiring in Glioblastoma Cancer:Frontiers in oncology · 2022
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Qian GaoDepartment of Health Statistics, Shanxi Medical University, Taiyuan 030001, China.
Yan CuiDepartment of Health Statistics, Shanxi Medical University, Taiyuan 030001, China.
Yanan ShenDepartment of Health Statistics, Shanxi Medical University, Taiyuan 030001, China.
Yanyan LiDepartment of Health Statistics, Shanxi Medical University, Taiyuan 030001, China.
Xue GaoDepartment of Health Statistics, Shanxi Medical University, Taiyuan 030001, China.
Yanfeng XiDepartment of Pathology, Shanxi Tumor Hospital, Taiyuan 030013, China.
Tong WangDepartment of Health Statistics, Shanxi Medical University, Taiyuan 030001, China.ORCID https://orcid.org/0000-0002-9403-7167
Shanxi Medical University · CNShanxi Provincial Cancer Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pathogenesis and prognosis of glioblastoma (GBM) remain poorly understood. Mutual exclusivity analysis can distinguish driver genes and pathways from passenger ones. The purpose of this study was to identify mutually exclusive gene sets (MEGSs) that have prognostic value and to detect novel driver genes in GBM. The genomic alteration profile and clinical information were derived from The Cancer Genome Atlas, and the MEGSA method was used to identify the MEGS. Next, we performed survival analysis and constructed a risk prediction model for prognostic stratification. Leave-one-out cross-validation and permutation test were used to evaluate its performance. Finally, we identified 21 statistically significant MEGSs. We found that the MEGS in the RB pathway was significantly associated with poor prognosis, after adjusting for age and gender (HR = 1.837, 95% CI: 1.192-2.831). Based on the risk prediction model, 208 (80.9%) and 49 (19.1%) patients were assigned to high- and low-risk groups, respectively (log-rank:

Indexed as

AdultAgedAged, 80 and overAlgorithmsCarrier ProteinsComputational BiologyFemaleGene Expression Regulation, NeoplasticGene Regulatory NetworksGenetic Predisposition to DiseaseGlioblastomaHumansMaleMicrofilament ProteinsMiddle AgedMultivariate AnalysisCarrier ProteinsMicrofilament ProteinsSpectrin

Identifiers

PMID31815141
PMCPMC6878817
OpenAlexW2989273616

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.