Evidence map›Paper›PMID 31814616›Full record

ArticleJournal of visualized experiments : JoVE2019

Databases to Efficiently Manage Medium Sized, Low Velocity, Multidimensional Data in Tissue Engineering.

Alexander R Ochs, Mehrsa Mehrabi, Danielle Becker, Mira N Asad, Jing Zhao, Michael V Zaragoza, Anna Grosberg

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Alexander R OchsDepartment of Biomedical Engineering, University of California, Irvine; The Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California, Irvine.
Mehrsa MehrabiDepartment of Biomedical Engineering, University of California, Irvine; The Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California, Irvine.
Danielle BeckerDepartment of Biomedical Engineering, University of California, Irvine; The Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California, Irvine.
Mira N AsadDepartment of Biomedical Engineering, University of California, Irvine; The Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California, Irvine.
Jing ZhaoDepartment of Biomedical Engineering, University of California, Irvine; The Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California, Irvine.
Michael V ZaragozaPediatrics-Genetics & Genomics Division-School of Medicine, University of California, Irvine; Biological Chemistry-School of Medicine, University of California, Irvine.
Anna GrosbergDepartment of Biomedical Engineering, University of California, Irvine; The Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California, Irvine; Department of Chemical and Biomolecular Engineering, University of California, Irvine; Center for Complex Biological Systems, University of California, Irvine; The NSF-Simons Center for Multiscale Cell Fate Research (CMCF), University of California, Irvine; grosberg@uci.edu.
University of California, Irvine · USEdwards Lifesciences (United States) · US

Funding

Cardiac Functional and Structural Implications of Lamin A/C MutationsR01HL129008 · NHLBI · UNIVERSITY OF CALIFORNIA-IRVINE · PI GROSBERG, ANNA, ZARAGOZA, MICHAEL V · 2015 to 2019
$2.1M
Training Program in Cardiovascular Applied Research and EntrepreneurshipT32HL116270 · NHLBI · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUGHES, CHRISTOPHER C. W. · 2013 to 2022
$1.6M
NHLBI NIH HHS R01 HL129008NHLBI NIH HHS T32 HL116270
6 · The paper itself

Abstract

Science relies on increasingly complex data sets for progress, but common data management methods such as spreadsheet programs are inadequate for the growing scale and complexity of this information. While database management systems have the potential to rectify these issues, they are not commonly utilized outside of business and informatics fields. Yet, many research labs already generate "medium sized", low velocity, multi-dimensional data that could greatly benefit from implementing similar systems. In this article, we provide a conceptual overview explaining how databases function and the advantages they provide in tissue engineering applications. Structural fibroblast data from individuals with a lamin A/C mutation was used to illustrate examples within a specific experimental context. Examples include visualizing multidimensional data, linking tables in a relational database structure, mapping a semi-automated data pipeline to convert raw data into structured formats, and explaining the underlying syntax of a query. Outcomes from analyzing the data were used to create plots of various arrangements and significance was demonstrated in cell organization in aligned environments between the positive control of Hutchinson-Gilford progeria, a well-known laminopathy, and all other experimental groups. In comparison to spreadsheets, database methods were enormously time efficient, simple to use once set up, allowed for immediate access of original file locations, and increased data rigor. In response to the National Institutes of Health (NIH) emphasis on experimental rigor, it is likely that many scientific fields will eventually adopt databases as common practice due to their strong capability to effectively organize complex data.

Indexed as

Database Management SystemsDatabases, FactualTissue EngineeringCell LineHumansLamin Type AUnited Stateslamin CLamin Type A

Identifiers

PMID31814616
PMCPMC7156791
OpenAlexW2990795395

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.