Evidence map›Paper›PMID 31813112›Full record

ArticleJournal of clinical immunology2020

NAPDH Oxidase-Specific Flow Cytometry Allows for Rapid Genetic Triage and Classification of Novel Variants in Chronic Granulomatous Disease.

Keith A Sacco, Matthew J Smith, Sami L Bahna, David Buchbinder, Joshua Burkhardt, Megan A Cooper, Nicholas L Hartog, Lisa Kobrynski, Kiran P Patel, Roshini S Abraham

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Article in Journal of clinical immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Variant Type X91Journal of clinical immunology · 2022
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 8 institutions in 1 country.

Keith A SaccoDepartment of Medicine, Mayo Clinic, Jacksonville, FL, USA.
Matthew J SmithDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.
Sami L BahnaSection of Allergy and Immunology, Louisiana State University Health Sciences Center, Shreveport, LA, USA.
David BuchbinderDepartment of Pediatric Hematology, Children's Hospital, County, Orange, CA, USA.
Joshua BurkhardtSection of Allergy and Immunology, Louisiana State University Health Sciences Center, Shreveport, LA, USA.
Megan A CooperDepartment of Pediatrics, Division of Rheumatology and Department of Pathology and Immunology, Washington University, St. Louis, MO, USA.
Nicholas L HartogDivision of Allergy and Immunology, Michigan State College of Human Medicine, Grand Rapids, MI, USA.
Lisa KobrynskiDivision of Allergy and Immunology, Emory University, Atlanta, GA, USA.
Kiran P PatelDivision of Allergy and Immunology, Emory University, Atlanta, GA, USA.
Roshini S AbrahamDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA. Roshini.Abraham@nationwidechildrens.org.
Emory University · USLouisiana State University Health Sciences Center Shreveport · USChildren's Hospital of Orange County · USCorewell Health Blodgett Hospital · USMayo Clinic in Arizona · USMayo Clinic in Florida · USNationwide Children's Hospital · USWashington University in St. Louis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeChronic granulomatous disease (CGD) is an innate immune deficiency, primarily affecting the phagocytic compartment, and presenting with a diverse phenotypic spectrum ranging from severe childhood infections to monogenic inflammatory bowel disease. Dihydrorhodamine (DHR) flow cytometry is the standard diagnostic test for CGD, and correlates with NADPH oxidase activity. While there may be genotype correlation with the DHR flow pattern in some patients, in several others, there is no correlation. In such patients, assessment by flow cytometric evaluation of NADPH oxidase-specific (NOX) proteins provides a convenient and rapid means of genetic triage, though immunoblotting has long been used for this purpose. METHODS AND

resultsWe describe the clinical utility of the NOX flow cytometry assay through assessment of X-linked and autosomal recessive CGD patients and their first-degree relatives. The assessment of specific NOX proteins was correlated with overall NADPH oxidase function (DHR flow), clinical phenotype and genotype. NOX-specific protein assessment is a valuable adjunct to DHR assessment and genotyping to classify and characterize CGD patients.

conclusionsThe atypical clinical presentation of some CGD patients can make genotype-phenotype correlation with DHR flow data challenging. Genetic testing, while useful for confirmation of diagnosis, can take several weeks, and in some patients does not provide a conclusive answer. However, NADPH-oxidase-specific protein flow assessment offers a rapid alternative to identification of the underlying genetic defect in cellular subsets, and can be utilized as a reflex test to an abnormal DHR flow. Further, it can provide insight into correlation between oxidative burst relative to protein expression in granulocytes and monocytes.

Indexed as

AdolescentChildChild, PreschoolFemaleFlow CytometryGenotypeGranulocytesGranulomatous Disease, ChronicHumansImmunologic Deficiency SyndromesInfantMaleNADPH OxidasesPhenotypeRespiratory BurstTriageNADPH OxidasesChronic granulomatous diseaseCYBACYBBflow cytometrygp91phoxNADPH oxidaseNCF1p22phoxp47phoxprimary immunodeficiencies

Identifiers

PMID31813112
OpenAlexW2992269120

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.