Evidence map›Paper›PMID 31811683›Full record

ArticleProtein science : a publication of the Protein Society2020

Structure of galactarate dehydratase, a new fold in an enolase involved in bacterial fitness after antibiotic treatment.

Monica Rosas-Lemus, George Minasov, Ludmilla Shuvalova, Zdzislaw Wawrzak, Olga Kiryukhina, Nathan Mih, Lukasz Jaroszewski, Bernhard Palsson, Adam Godzik, Karla J F Satchell

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Monica Rosas-LemusDepartment of Microbiology-Immunology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois.
George MinasovDepartment of Microbiology-Immunology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois.
Ludmilla ShuvalovaDepartment of Microbiology-Immunology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois.
Zdzislaw WawrzakNorthwestern Synchrotron Research Center-LS-CAT, Northwestern University, Argonne, Illinois.
Olga KiryukhinaDepartment of Microbiology-Immunology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois.
Nathan MihDepartment of Bioengineering, University of California San Diego, La Jolla, California.
Lukasz JaroszewskiCenter for Structural Genomics of Infectious Diseases, Northwestern University, Feinberg School of Medicine, Chicago, Illinois.
Bernhard PalssonDepartment of Bioengineering, University of California San Diego, La Jolla, California.
Adam GodzikCenter for Structural Genomics of Infectious Diseases, Northwestern University, Feinberg School of Medicine, Chicago, Illinois.
Karla J F SatchellDepartment of Microbiology-Immunology, Northwestern University, Feinberg School of Medicine, Chicago, Illinois.ORCID 0000-0003-3274-7611
Northwestern University · USUniversity of California, Riverside · USUniversity of California San Diego · US

Funding

Systems Biology Approach to Redefine Susceptibility Testing and Treatment of MDR Pathogens in the Context of Host ImmunityU01AI124316 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PALSSON, BERNHARD O · 2016 to 2020
$10.2M
GENOMICALLY BASED MODELS FOR ANTIBIOTIC DEVELOPMENTR01GM057089 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PALSSON, BERNHARD O · 1998 to 2021
$6.9M
Understanding structural flexibility and evolutionary divergence of proteinsR35GM118187 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GODZIK, ADAM · 2016 to 2020
$1.9M
NIAID NIH HHS HHSN272201200026CNIAID NIH HHS HHSN272201700060CNIAID NIH HHS U01 AI124316NIAID NIH HHS U01AI124316NIGMS NIH HHS GM05789NIGMS NIH HHS GM118187NIGMS NIH HHS R01 GM057089NIGMS NIH HHS R35 GM118187
6 · The paper itself

Abstract

Galactarate dehydratase (GarD) is the first enzyme in the galactarate/glucarate pathway and catalyzes the dehydration of galactarate to 3-keto-5-dehydroxygalactarate. This protein is known to increase colonization fitness of intestinal pathogens in antibiotic-treated mice and to promote bacterial survival during stress. The galactarate/glucarate pathway is widespread in bacteria, but not in humans, and thus could be a target to develop new inhibitors for use in combination therapy to combat antibiotic resistance. The structure of almost all the enzymes of the galactarate/glucarate pathway were solved previously, except for GarD, for which only the structure of the N-terminal domain was determined previously. Herein, we report the first crystal structure of full-length GarD solved using a seleno-methoionine derivative revealing a new protein fold. The protein consists of three domains, each presenting a novel twist as compared to their distant homologs. GarD in the crystal structure forms dimers and each monomer consists of three domains. The N-terminal domain is comprised of a β-clip fold, connected to the second domain by a long unstructured linker. The second domain serves as a dimerization interface between two monomers. The C-terminal domain forms an unusual variant of a Rossmann fold with a crossover and is built around a seven-stranded parallel β-sheet supported by nine α-helices. A metal binding site in the C-terminal domain is occupied by Ca

Indexed as

Anti-Bacterial AgentsBacteriaCrystallography, X-RayHydro-LyasesMicrobial Sensitivity TestsModels, MolecularMolecular StructurePhosphopyruvate HydrataseProtein FoldingAnti-Bacterial AgentsHydro-LyasesPhosphopyruvate Hydrataseantibiotic treatmentbacterial fitnessenolaseEscherichia coligalactarate dehydrataseintestinal pathogensnovel fold

Identifiers

PMID31811683
PMCPMC7021002
OpenAlexW2994583411

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.