Evidence map›Paper›PMID 31811507›Full record

ArticleEuropean journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology2020

Five-year Pan-European, longitudinal surveillance of Clostridium difficile ribotype prevalence and antimicrobial resistance: the extended ClosER study.

Jane Freeman, Jonathan Vernon, Sally Pilling, Kirsti Morris, Scott Nicolson, Sharie Shearman, Emma Clark, Jose Alejandro Palacios-Fabrega, Mark Wilcox, Pan-European Longitudinal Surveillance of Antibiotic Resistance among Prevalent Clostridium difficile Ribotypes’ Study Group

Open access · hybridAbstract readMulticenter Study
In one paragraph

Article in European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 78 citations in OpenAlex.

  1. A sensitive and reduced-cost culture medium for recovery ofJournal of clinical microbiology · 2026
    Article
  2. Article
  3. Article
  4. Healthcare-associated infections and antimicrobial resistance in Canadian acute care hospitals, 2020-2024.Canada communicable disease report = Releve des maladies transmissibles au Canada · 2026
    Article
  5. Article
  6. Review
  7. Antimicrobial Resistance ofAntibiotics (Basel, Switzerland) · 2025
    Article
  8. Healthcare-associated infections and antimicrobial resistance in Canadian acute care hospitals, 2019-2023.Canada communicable disease report = Releve des maladies transmissibles au Canada · 2025
    Article
  9. Article
  10. Emergence and Spread of Clostridioides difficile Isolates With Reduced Fidaxomicin Susceptibility in an Acute Care Hospital.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2025
    Article
  11. Article
  12. Article
  13. Molecular Epidemiology ofAntibiotics (Basel, Switzerland) · 2025
    Article
  14. Review
  15. Antimicrobial susceptibility inJAC-antimicrobial resistance · 2024
    Article
  16. Article
  17. Clostridioides difficile Sporulation.Advances in experimental medicine and biology · 2024
    Review
  18. Antibiotic Resistances of Clostridioides difficile.Advances in experimental medicine and biology · 2024
    Article
  19. Ribotypes and New Virulent Strains Across Europe.Advances in experimental medicine and biology · 2024
    Review
  20. Microorganisms · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jane FreemanDepartment of Microbiology, Leeds Teaching Hospitals Trust, Leeds, UK. jane.freeman4@nhs.net.
Jonathan VernonHealthcare Associated Infections Research Group, The Leeds Institute of Medical Research, University of Leeds, Leeds, UK.
Sally PillingHealthcare Associated Infections Research Group, The Leeds Institute of Medical Research, University of Leeds, Leeds, UK.
Kirsti MorrisDepartment of Microbiology, Leeds Teaching Hospitals Trust, Leeds, UK.
Scott NicolsonHealthcare Associated Infections Research Group, The Leeds Institute of Medical Research, University of Leeds, Leeds, UK.
Sharie ShearmanHealthcare Associated Infections Research Group, The Leeds Institute of Medical Research, University of Leeds, Leeds, UK.
Emma ClarkHealthcare Associated Infections Research Group, The Leeds Institute of Medical Research, University of Leeds, Leeds, UK.
Jose Alejandro Palacios-FabregaAstellas Pharma, Inc., Chertsey, UK.
Mark WilcoxDepartment of Microbiology, Leeds Teaching Hospitals Trust, Leeds, UK.
Pan-European Longitudinal Surveillance of Antibiotic Resistance among Prevalent Clostridium difficile Ribotypes’ Study Group
University of Leeds · GBLeeds Teaching Hospitals NHS Trust · GB

Funding

Astellas Pharma, Inc. NA
6 · The paper itself

Abstract

Clostridium difficile infection (CDI) has been primarily treated with metronidazole or vancomycin. High recurrence rates, the emergence of epidemic PCR ribotypes (RTs) and the introduction of fidaxomicin in Europe in 2011 necessitate surveillance of antimicrobial resistance and CDI epidemiology. The ClosER study monitored antimicrobial susceptibility and geographical distribution of C. difficile RTs pre- and post-fidaxomicin introduction. From 2011 to 2016, 28 European countries submitted isolates or faecal samples for determination of PCR ribotype, toxin status and minimal inhibitory concentrations (MICs) of metronidazole, vancomycin, rifampicin, fidaxomicin, moxifloxacin, clindamycin, imipenem, chloramphenicol and tigecycline. RT diversity scores for each country were calculated and mean MIC results used to generate cumulative resistant scores (CRSs) for each isolate and country. From 40 sites, 3499 isolates were analysed, of which 95% (3338/3499) were toxin positive. The most common of the 264 RTs isolated was RT027 (mean prevalence 11.4%); however, RT prevalence varied greatly between countries and between years. The fidaxomicin geometric mean MIC for years 1-5 was 0.04 mg/L; only one fidaxomicin-resistant isolate (RT344) was submitted (MIC ≥ 4 mg/L). Metronidazole and vancomycin geometric mean MICs were 0.46 mg/L and 0.70 mg/L, respectively. Of prevalent RTs, RT027, RT017 and RT012 demonstrated resistance or reduced susceptibility to multiple antimicrobials. RT diversity was inversely correlated with mean CRS for individual countries (Pearson coefficient r = - 0.57). Overall, C. difficile RT prevalence remained stable in 2011-2016. Fidaxomicin susceptibility, including in RT027, was maintained post-introduction. Reduced ribotype diversity in individual countries was associated with increased antimicrobial resistance.

Indexed as

RibotypingAnti-Bacterial AgentsClostridioides difficileClostridium InfectionsEnterocolitis, PseudomembranousEpidemiological MonitoringEuropeFecesHumansLongitudinal StudiesMicrobial Sensitivity TestsPrevalenceAnti-Bacterial AgentsAntimicrobial resistanceAntimicrobial susceptibilityClostridium difficileRibotype prevalenceSurveillance

Identifiers

PMID31811507
PMCPMC6962284
OpenAlexW2991943729

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.