Evidence map›Paper›PMID 31811240›Full record

ArticleNature communications2019

NAIL-MS reveals the repair of 2-methylthiocytidine by AlkB in E. coli.

Valentin F Reichle, Dimitar P Petrov, Verena Weber, Kirsten Jung, Stefanie Kellner

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Opportunities and Challenges to Profile mRNA Modifications in Escherichia coli.Chembiochem : a European journal of chemical biology · 2022
    Article
  7. Biosynthesis and Degradation of Sulfur Modifications in tRNAs.International journal of molecular sciences · 2021
    Review
  8. Strategies to Avoid Artifacts in Mass Spectrometry-Based Epitranscriptome Analyses.Angewandte Chemie (International ed. in English) · 2021
    Article
  9. Article
  10. Adaptor Molecules Epitranscriptome Reprograms Bacterial Pathogenicity.International journal of molecular sciences · 2021
    Review
  11. Review
  12. Article
  13. tRNA Modifications as a Readout of S and Fe-S Metabolism.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  14. Synthesis and Metabolic Fate of 4-Methylthiouridine in Bacterial tRNA.Chembiochem : a European journal of chemical biology · 2020
    Article
  15. Review
  16. Naturally occurring modified ribonucleosides.Wiley interdisciplinary reviews. RNA · 2020
    Review
  17. Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Valentin F ReichleDepartment of Chemistry, Ludwig-Maximilians-University Munich, Butenandtstr. 5-13, 81377, Munich, Germany.
Dimitar P PetrovDepartment of Biology, Ludwig-Maximilians-University Munich, Grosshaderner Str. 2-4, 82152, Martinsried, Germany.
Verena WeberDepartment of Chemistry, Ludwig-Maximilians-University Munich, Butenandtstr. 5-13, 81377, Munich, Germany.
Kirsten JungDepartment of Biology, Ludwig-Maximilians-University Munich, Grosshaderner Str. 2-4, 82152, Martinsried, Germany.
Stefanie KellnerDepartment of Chemistry, Ludwig-Maximilians-University Munich, Butenandtstr. 5-13, 81377, Munich, Germany. stefanie.kellner@cup.uni-muenchen.de.ORCID http://orcid.org/0000-0003-3224-7502
Ludwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNAs contain post-transcriptional modifications, which fulfill a variety of functions in translation, secondary structure stabilization and cellular stress survival. Here, 2-methylthiocytidine (ms

Indexed as

RNA Processing, Post-TranscriptionalCytidineDemethylationEscherichia coliEscherichia coli ProteinsGene Knockout TechniquesIsotope LabelingMass SpectrometryMethylationMixed Function OxygenasesNucleic AcidsPseudomonas aeruginosaRNA, BacterialRNA, TransfertRNA Methyltransferases2-thiocytidineAlkB protein, E coliCytidineEscherichia coli ProteinsMixed Function OxygenasesNucleic AcidsRNA, BacterialRNA, TransfertRNA Methyltransferases

Identifiers

PMID31811240
PMCPMC6898146
OpenAlexW2992907226

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.