Evidence map›Paper›PMID 31811157›Full record

ArticleScientific reports2019

Essential roles of autophagy in metabolic regulation in endosperm development during rice seed maturation.

Yuri Sera, Shigeru Hanamata, Shingo Sakamoto, Seijiro Ono, Kentaro Kaneko, Yuudai Mitsui, Tomoko Koyano, Naoko Fujita, Ai Sasou, Takehiro Masumura and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Evolutionary conservation and metabolic significance of autophagy in algae.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  8. Article
  9. Autophagy in plants.Autophagy reports · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Linking Autophagy to Potential Agronomic Trait Improvement in Crops.International journal of molecular sciences · 2022
    Review
  14. Article
  15. CRISPR/Cas9-Mediated Editing ofFrontiers in plant science · 2022
    Article
  16. Article
  17. Identification and Pleiotropic Effect Analysis ofFrontiers in plant science · 2021
    Article
  18. Recent Advances in Carbon and Nitrogen Metabolism in C3 Plants.International journal of molecular sciences · 2020
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 2 countries.

Yuri SeraDepartment of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan.
Shigeru HanamataDepartment of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan.
Shingo SakamotoBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, 305-8566, Japan.ORCID http://orcid.org/0000-0001-6019-1732
Seijiro OnoPlant Cytogenetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka, 411-8540, Japan.
Kentaro KanekoGraduate School of Science and Technology, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181, Japan.
Yuudai MitsuiGraduate School of Science and Technology, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181, Japan.
Tomoko KoyanoDepartment of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan.
Naoko FujitaDepartment of Biological Production, Akita Prefectural University, 241-438 Shimoshinjo Nakano Kaidobata-Nishi, Akita City, Akita, 010-0195, Japan.
Ai SasouLaboratory of Genetic Engineering, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo, Kyoto, 606-8522, Japan.
Takehiro MasumuraLaboratory of Genetic Engineering, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo, Kyoto, 606-8522, Japan.
Hikaru SajiCenter for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies (NIES), Onogawa, Tsukuba, Ibaraki, 305-8506, Japan.
Ken-Ichi NonomuraPlant Cytogenetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka, 411-8540, Japan.
Nobutaka MitsudaBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, 305-8566, Japan.ORCID http://orcid.org/0000-0001-5689-3678
Toshiaki MitsuiGraduate School of Science and Technology, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181, Japan.
Takamitsu KurusuDepartment of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan. kurusu@rs.sus.ac.jp.
Kazuyuki KuchitsuDepartment of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan. kuchitsu@rs.tus.ac.jp.ORCID http://orcid.org/0000-0001-8854-0375
Tokyo University of Science · JPNiigata University · JPKyoto Prefectural University · JPNational Institute of Advanced Industrial Science and Technology · JPNational Institute of Genetics · JPAkita Prefectural University · JPNational Institute for Environmental Studies · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autophagy plays crucial roles in the recycling of metabolites, and is involved in many developmental processes. Rice mutants defective in autophagy are male sterile due to immature pollens, indicating its critical role in pollen development. However, physiological roles of autophagy during seed maturation had remained unknown. We here found that seeds of the rice autophagy-deficient mutant Osatg7-1, that produces seeds at a very low frequency in paddy fields, are smaller and show chalky appearance and lower starch content in the endosperm at the mature stage under normal growth condition. We comprehensively analyzed the effects of disruption of autophagy on biochemical properties, proteome and seed quality, and found an abnormal activation of starch degradation pathways including accumulation of α-amylases in the endosperm during seed maturation in Osatg7-1. These results indicate critical involvement of autophagy in metabolic regulation in the endosperm of rice, and provide insights into novel autophagy-mediated regulation of starch metabolism during seed maturation.

Indexed as

alpha-AmylasesAutophagyAutophagy-Related ProteinsEndospermGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantMutationOryzaPlant ProteinsStarchUp-Regulationalpha-AmylasesAutophagy-Related ProteinsPlant ProteinsStarch

Identifiers

PMID31811157
PMCPMC6898296
OpenAlexW2992912562

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.