Evidence map›Paper›PMID 31811138›Full record

ArticleNature communications2019

CRISPR-Cas3 induces broad and unidirectional genome editing in human cells.

Hiroyuki Morisaka, Kazuto Yoshimi, Yuya Okuzaki, Peter Gee, Yayoi Kunihiro, Ekasit Sonpho, Huaigeng Xu, Noriko Sasakawa, Yuki Naito, Shinichiro Nakada and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed, 1 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 1 synthesis or guideline pooled it, 188 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Sensitizing carbapenem-resistant Klebsiella pneumoniae using a compact Cascade-Cas3 system.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Gigabase-scale deletion scanning of the human genome.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review

46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Hiroyuki MorisakaDepartment of Genome Biology, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan.ORCID http://orcid.org/0000-0002-1158-8116
Kazuto YoshimiGenome Editing Research and Development Center, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan.
Yuya OkuzakiCenter for iPS Cell Research and Application (CiRA), Department of Clinical Application, Kyoto University, Kyoto, 606-8507, Japan.ORCID http://orcid.org/0000-0002-7212-4366
Peter GeeCenter for iPS Cell Research and Application (CiRA), Department of Clinical Application, Kyoto University, Kyoto, 606-8507, Japan.ORCID http://orcid.org/0000-0002-2481-5103
Yayoi KunihiroGenome Editing Research and Development Center, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan.ORCID http://orcid.org/0000-0001-7153-1667
Ekasit SonphoInstitute of Experimental Animal Sciences, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan.
Huaigeng XuCenter for iPS Cell Research and Application (CiRA), Department of Clinical Application, Kyoto University, Kyoto, 606-8507, Japan.ORCID http://orcid.org/0000-0002-4415-1287
Noriko SasakawaCenter for iPS Cell Research and Application (CiRA), Department of Clinical Application, Kyoto University, Kyoto, 606-8507, Japan.
Yuki NaitoDatabase Center for Life Science, Mishima, 411-8540, Japan.
Shinichiro NakadaInstitute for Advanced Co-Creation Studies, Osaka University, Osaka, 565-0871, Japan.
Takashi YamamotoDepartment of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Higashi-Hiroshima, 739-8526, Japan.
Shigetoshi SanoDepartment of Dermatology, Kochi Medical School, Kochi University, Kochi, 783-8505, Japan.
Akitsu HottaCenter for iPS Cell Research and Application (CiRA), Department of Clinical Application, Kyoto University, Kyoto, 606-8507, Japan. akitsu.hotta@cira.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-2619-7441
Junji TakedaDepartment of Genome Biology, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan. jjjtakeda@biken.osaka-u.ac.jp.
Tomoji MashimoGenome Editing Research and Development Center, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan. mashimo@ims.u-tokyo.ac.jp.
Kyoto University · JPThe University of Osaka · JPKōchi University · JPThe University of Tokyo · JPHiroshima University · JPMahidol University · THNational Institute of Genetics · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although single-component Class 2 CRISPR systems, such as type II Cas9 or type V Cas12a (Cpf1), are widely used for genome editing in eukaryotic cells, the application of multi-component Class 1 CRISPR has been less developed. Here we demonstrate that type I-E CRISPR mediates distinct DNA cleavage activity in human cells. Notably, Cas3, which possesses helicase and nuclease activity, predominantly triggered several thousand base pair deletions upstream of the 5'-ARG protospacer adjacent motif (PAM), without prominent off-target activity. This Cas3-mediated directional and broad DNA degradation can be used to introduce functional gene knockouts and knock-ins. As an example of potential therapeutic applications, we show Cas3-mediated exon-skipping of the Duchenne muscular dystrophy (DMD) gene in patient-induced pluripotent stem cells (iPSCs). These findings broaden our understanding of the Class 1 CRISPR system, which may serve as a unique genome editing tool in eukaryotic cells distinct from the Class 2 CRISPR system.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated ProteinsCRISPR-Cas SystemsDNA CleavageDNA HelicasesExonsGene EditingGene Expression RegulationGene Knockout TechniquesHEK293 CellsHumansInduced Pluripotent Stem CellsMuscular Dystrophy, DuchenneSequence DeletionCRISPR-Associated ProteinsDNA Helicases

Identifiers

PMID31811138
PMCPMC6897959
OpenAlexW2992446669

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.