Evidence map›Paper›PMID 31811116›Full record

ArticleNature communications2019

Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks.

Natalie M Clark, Eli Buckner, Adam P Fisher, Emily C Nelson, Thomas T Nguyen, Abigail R Simmons, Maria A de Luis Balaguer, Tiara Butler-Smith, Parnell J Sheldon, Dominique C Bergmann and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 75 citations in OpenAlex.

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  13. A Practical Guide to Inferring Multi-Omics Networks in Plant Systems.Methods in molecular biology (Clifton, N.J.) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Natalie M ClarkDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, United States.
Eli BucknerDepartment of Electrical and Computer Engineering, North Carolina State University, Raleigh, NC, 27695, United States.
Adam P FisherDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, United States.
Emily C NelsonDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, United States.
Thomas T NguyenDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, United States.
Abigail R SimmonsDepartment of Biology, Stanford University, Stanford, CA, 94305, United States.
Maria A de Luis BalaguerDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, United States.
Tiara Butler-SmithDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, United States.
Parnell J SheldonDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, United States.ORCID http://orcid.org/0000-0002-8099-0483
Dominique C BergmannDepartment of Biology, Stanford University, Stanford, CA, 94305, United States.
Cranos M WilliamsDepartment of Electrical and Computer Engineering, North Carolina State University, Raleigh, NC, 27695, United States.
Rossangela SozzaniDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, United States. ross_sozzani@ncsu.edu.
North Carolina State University · USHoward Hughes Medical Institute · USStanford University · US

Funding

U.S. Department of Health & Human Services | National Institutes of Health (NIH) NIH5T32GM007276
6 · The paper itself

Abstract

Stem cells are responsible for generating all of the differentiated cells, tissues, and organs in a multicellular organism and, thus, play a crucial role in cell renewal, regeneration, and organization. A number of stem cell type-specific genes have a known role in stem cell maintenance, identity, and/or division. Yet, how genes expressed across different stem cell types, referred to here as stem-cell-ubiquitous genes, contribute to stem cell regulation is less understood. Here, we find that, in the Arabidopsis root, a stem-cell-ubiquitous gene, TESMIN-LIKE CXC2 (TCX2), controls stem cell division by regulating stem cell-type specific networks. Development of a mathematical model of TCX2 expression allows us to show that TCX2 orchestrates the coordinated division of different stem cell types. Our results highlight that genes expressed across different stem cell types ensure cross-communication among cells, allowing them to divide and develop harmonically together.

Indexed as

Stem CellsArabidopsisArabidopsis ProteinsAsymmetric Cell DivisionCell DifferentiationCell DivisionGene Expression Regulation, PlantGene Regulatory NetworksPlant RootsTranscription FactorsTranscriptomeUbiquitinationUbiquitinsArabidopsis ProteinsTranscription FactorsUbiquitins

Identifiers

PMID31811116
PMCPMC6897965
OpenAlexW2993225204

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.