Evidence map›Paper›PMID 31810189›Full record

ArticleInternational journal of molecular sciences2019

Evaluation of the Major Steps in the Conventional Protocol for the Alkaline Comet Assay.

Mahsa Karbaschi, Yunhee Ji, Abdulhadi Mohammed S Abdulwahed, Alhanoof Alohaly, Juan F Bedoya, Shanna L Burke, Thomas M Boulos, Helen G Tempest, Marcus S Cooke

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Alkaline Comet Assay to Assess Genotoxicity in Zebrafish Larvae.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Knockout ofBiomedicines · 2021
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mahsa KarbaschiOxidative Stress Group, Department of Environmental Health Sciences, Florida International University, Miami, FL 33199, USA.
Yunhee JiOxidative Stress Group, Department of Environmental Health Sciences, Florida International University, Miami, FL 33199, USA.ORCID 0000-0002-3814-382X
Abdulhadi Mohammed S AbdulwahedOxidative Stress Group, Department of Environmental Health Sciences, Florida International University, Miami, FL 33199, USA.
Alhanoof AlohalyDepartment of Dietetics and Nutrition, Florida International University, Miami, FL 33199, USA.
Juan F BedoyaOxidative Stress Group, Department of Environmental Health Sciences, Florida International University, Miami, FL 33199, USA.
Shanna L BurkeSchool of Social Work, Florida International University, Miami, FL 33199, USA.ORCID 0000-0001-6969-3536
Thomas M BoulosOxidative Stress Group, Department of Environmental Health Sciences, Florida International University, Miami, FL 33199, USA.
Helen G TempestDepartment of Human and Molecular Genetics, Florida International University, Miami, FL 33199, USA.ORCID 0000-0002-2369-4127
Marcus S CookeOxidative Stress Group, Department of Environmental Health Sciences, Florida International University, Miami, FL 33199, USA.ORCID 0000-0003-0369-862X

Funding

AHTP-comet: development of an automated, high throughput comet assay systemR41ES030274 · NIEHS · ENGINEERING RESOURCES GROUP, INC. · PI COOKE, MARCUS STANLEY, ROSS, CHRISTOPHER · 2019 to 2019
$150k
NIEHS NIH HHS R41ES030274
6 · The paper itself

Abstract

Single cell gel electrophoresis, also known as the comet assay, has become a widespread DNA damage assessment tool due to its sensitivity, adaptability, low cost, ease of use, and reliability. Despite these benefits, this assay has shortcomings, such as long assay running time, the manipulation of multiple slides, individually, through numerous process steps, the challenge of working in a darkened environment, and reportedly considerable inter- and intra-laboratory variation. All researchers typically perform the comet assay based upon a common core approach; however, it appears that some steps in this core have little proven basis, and may exist, partly, out of convenience, or dogma. The aim of this study was to critically re-evaluate key steps in the comet assay, using our laboratory's protocol as a model, firstly to understand the scientific basis for why certain steps in the protocol are performed in a particular manner, and secondly to simplify the assay, and decrease the cost and run time. Here, the shelf life of the lysis and neutralization buffers, the effect of temperature and incubation period during the lysis step, the necessity for drying the slides between the electrophoresis and staining step, and the need to perform the sample workup and electrophoresis steps under subdued light were all evaluated.

Indexed as

Comet AssayDNA DamageEnvironmental MonitoringHumansLaboratoriesSingle-Cell AnalysisTemperaturecomet assayDNA damageDNA repairgenotoxicityhuman biomonitoringoxidative stress

Identifiers

PMID31810189
PMCPMC6929057

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.