Evidence map›Paper›PMID 31809748›Full record

ArticleAmerican journal of human genetics2019

Identification of African-Specific Admixture between Modern and Archaic Humans.

Jeffrey D Wall, Aakrosh Ratan, Eric Stawiski, GenomeAsia 100K Consortium

Abstract read
In one paragraph

Article in American journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Favored Races in the Struggle for Life: Racism and the Speciation Concept.Cold Spring Harbor perspectives in biology · 2023
    Review
  4. Article
  5. Review
  6. Review
  7. The deep population history in Africa.Human molecular genetics · 2021
    Review
  8. Review
  9. Article
  10. Article
  11. Methods for detecting introgressed archaic sequences.Current opinion in genetics & development · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jeffrey D WallInstitute for Human Genetics and Department of Epidemiology and Biostatistics, University of California, San Francisco, CA 94143, USA. Electronic address: jeff.wall@ucsf.edu.
Aakrosh RatanCenter for Public Health Genomics, University of Virginia, Charlottesville, VA 22903, USA.
Eric StawiskiDepartments of Molecular Biology and Bioinformatics and Computational Biology, Genentech, Inc., South San Francisco, CA 94080, USA; Division of Bioinformatics, MedGenome, Inc., Foster City, CA 94404, USA.
GenomeAsia 100K Consortium

Funding

Women's Oncology Program - WONP30CA044579 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Thomas P. Loughran · 1987 to 2026
$72.1M
Estimating fine scale changes in recombination rates across speciesR01GM115433 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WALL, JEFFREY D · 2015 to 2018
$1.2M
NCI NIH HHS P30 CA044579NIGMS NIH HHS R01 GM115433
6 · The paper itself

Abstract

Recent work has demonstrated that two archaic human groups (Neanderthals and Denisovans) interbred with modern humans and contributed to the contemporary human gene pool. These findings relied on the availability of high-coverage genomes from both Neanderthals and Denisovans. Here we search for evidence of archaic admixture from a worldwide panel of 1,667 individuals using an approach that does not require the presence of an archaic human reference genome. We find no evidence for archaic admixture in the Andaman Islands, as previously claimed, or on the island of Flores, where Homo floresiensis fossils have been found. However, we do find evidence for at least one archaic admixture event in sub-Saharan Africa, with the strongest signal in Khoesan and Pygmy individuals from Southern and Central Africa. The locations of these putative archaic admixture tracts are weighted against functional regions of the genome, consistent with the long-term effects of purifying selection against introgressed genetic material.

Indexed as

FossilsGenetics, PopulationGenome, HumanAnimalsBlack PeopleGene PoolHominidaeHumansNeanderthalsarchaic humansDenisovanGenomeAsia projectghost admixtureNeanderthal

Identifiers

PMID31809748
PMCPMC6904834

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.