Evidence map›Paper›PMID 31809257›Full record

ArticleGenome research2020

The EnteroBase user's guide, with case studies on

Zhemin Zhou, Nabil-Fareed Alikhan, Khaled Mohamed, Yulei Fan, Agama Study Group, Mark Achtman

Abstract read
In one paragraph

Article in Genome research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 634 papers.

0numbers the graph read from it
0cells of the map it votes in
634citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

634 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A multi-country outbreak ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Surveillance of enteropathogenicJournal of medical microbiology · 2026
    Article
  9. Article
  10. Article
  11. Influence of iron uptake systems on cefiderocol activity inAntimicrobial agents and chemotherapy · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. iScience · 2026
    Article
  19. Genomic Characterization of Selected Multidrug-ResistantAnimals : an open access journal from MDPI · 2026
    Article
  20. Review

574 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nabil-Fareed AlikhanORCID 0000-0002-1243-0767
Yulei Fan
Agama Study Group

Funding

Biotechnology and Biological Sciences Research Council BB/L020319/1Wellcome Trust 202792/Z/16/Z
6 · The paper itself

Abstract

EnteroBase is an integrated software environment that supports the identification of global population structures within several bacterial genera that include pathogens. Here, we provide an overview of how EnteroBase works, what it can do, and its future prospects. EnteroBase has currently assembled more than 300,000 genomes from Illumina short reads from

Indexed as

Databases, GeneticGenome, BacterialGenomicsEscherichiaMetagenomeMetagenomicsMultilocus Sequence TypingPhylogenySalmonellaSoftwareUser-Computer InterfaceWeb BrowserYersinia pestis

Identifiers

PMID31809257
PMCPMC6961584

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.