Evidence map›Paper›PMID 31809050›Full record

ArticleThe journal of physical chemistry letters2019

Experimental Evidence of Solvent-Separated Ion Pairs as Metastable States in Electrostatic Interactions of Biological Macromolecules.

Binhan Yu, B Montgomery Pettitt, Junji Iwahara

Abstract read
In one paragraph

Article in The journal of physical chemistry letters, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Quantifying and visualizing weak interactions between anions and proteins.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Binhan YuDepartment of Biochemistry & Molecular Biology, Sealy Center for Structural Biology & Molecular Biophysics , University of Texas Medical Branch , Galveston , Texas 77555-1068 , United States.
B Montgomery PettittDepartment of Biochemistry & Molecular Biology, Sealy Center for Structural Biology & Molecular Biophysics , University of Texas Medical Branch , Galveston , Texas 77555-1068 , United States.ORCID http://orcid.org/0000-0003-4902-3046
Junji IwaharaDepartment of Biochemistry & Molecular Biology, Sealy Center for Structural Biology & Molecular Biophysics , University of Texas Medical Branch , Galveston , Texas 77555-1068 , United States.ORCID http://orcid.org/0000-0003-4732-2173

Funding

Theory of Proteins and Peptides in SolutionR01GM037657 · NIGMS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI PETTITT, BERNARD MONTGOMERY · 1988 to 2023
$5.5M
Dynamics of DNA scanning and recognition by transcription factorsR35GM130326 · NIGMS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Junji Iwahara · 2019 to 2026
$4.2M
NIGMS NIH HHS R01 GM037657NIGMS NIH HHS R35 GM130326
6 · The paper itself

Abstract

Electrostatic interactions via ion pairs are vital for biological macromolecules. Regarding the free energy of each ion pair as a function of the interionic distance, continuum electrostatic models predict a single energy minimum corresponding to the contact ion-pair (CIP) state, whereas atomically detailed theoretical hydration studies predict multiple energy minima corresponding to the CIP and solvent-separated ion-pair (SIP) states. Through a statistical analysis of high-resolution crystal structures, we present experimental evidence of the SIP as a metastable state. The histogram of interionic distances between protein side-chain NH

Indexed as

AminesDNAHydrogen BondingIonsMacromolecular SubstancesMolecular Dynamics SimulationPhosphatesProtein BindingProtein ConformationProteinsSolventsStatic ElectricityThermodynamicsWaterAminesDNAIonsMacromolecular SubstancesPhosphatesProteinsSolventsWater

Identifiers

PMID31809050
PMCPMC6936746

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.