Evidence map›Paper›PMID 31807961›Full record

ArticleInflammation2020

Integrative Bioinformatics Indentification of the Autophagic Pathway-Associated miRNA-mRNA Networks in RAW264.7 Macrophage Cells Infected with ∆Omp25 Brucella melitensis.

Hanwei Jiao, Yichen Luo, Zhixiong Zhou, Guojing Gu, Bowen Li, Wenjie Li, Yuxuan Liu, Yidan Wang, Xinglong Wang, Yu Zhao and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in Inflammation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Frontiers in immunology · 2025
    Article
  4. Frontiers in cellular and infection microbiology · 2024
    Review
  5. Article
  6. Review
  7. Uncovering the Hidden Credentials ofMicrobiology and molecular biology reviews : MMBR · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Hanwei JiaoVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China. jiaohanwei@swu.edu.cn.ORCID http://orcid.org/0000-0001-8001-8697
Yichen LuoVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Zhixiong ZhouVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Guojing GuVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Bowen LiVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Wenjie LiVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Yuxuan LiuVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Yidan WangVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Xinglong WangVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Yu ZhaoVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Li WuVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Jixuan ChenVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Xuehong ShuaiVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Qingzhou HuangVeterinary Scientific Engineering Research Center, College of Animal Science, Southwest University, Chongqing, 402460, People's Republic of China.
Southwest University · CN

Funding

Chongqing Research Program of Basic Research and Frontier Technology cstc2018jcyjA0807the National Science Foundation for Young Scientists of China 31802215
6 · The paper itself

Abstract

Brucellosis is a zoonotic infectious disease caused by Brucella infection. Outer membrane protein 25 (Omp25) is closely related to the virulence and immunogenicity of Brucella. However, the molecular mechanism of Omp25 affecting Brucella-mediated macrophage autophagy remains unclear. Our previous study reported that four miRNAs (the upregulation of mmu-miR-146a-5p and mmu-miR-155-5p and downregulation of mmu-miR-149-3p and mmu-miR-5126) were confirmed and revealed the differentially expressed genes (DEGs) profile in RAW264.7 macrophage cells infected with Brucella melitensis Omp25 deletion mutant (∆Omp25 B. melitensis). Here, we predicted the target genes of the four miRNAs by TargetScan, miRanda, and PicTar. GO and KEGG were used for functional enrichment analysis of DEGs profile to reveal the autophagic pathway-associated genes. The overlapped genes, which drawn the autophagic pathway-associated miRNA-mRNA networks by cytoscape software, were identified by intersecting with the predicted target genes and autophagic pathway-associated DEGs. qRT-PCR was performed to validate the mRNAs of networks. The results showed that the autophagic pathway-associated networks of mmu-miR-149-3p-Ptpn5, mmu-miR-149-3p-Ppp2r3c, and mmu-miR-146a-5p-Dusp16 were identified in RAW264.7 macrophage cells infected with ∆Omp25 B. melitensis. Our findings are of great significance in elucidating the function of Omp25, revealing the infection mechanism of Brucella and prophylaxising and treating brucellosis.

Indexed as

Adaptor Proteins, Signal TransducingAnimalsAutophagyBrucella melitensisBrucellosisComputational BiologyGene Regulatory NetworksMacrophagesMembrane ProteinsMiceMicroRNAsRAW 264.7 CellsRNA, MessengerSignal TransductionAdaptor Proteins, Signal TransducingMembrane ProteinsMicroRNAsRNA, MessengerSynj2bp protein, mouseautophagyBrucellamiRNA-mRNA networkOmp25RAW264.7

Identifiers

PMID31807961
OpenAlexW2993172064

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.