Evidence map›Paper›PMID 31807954›Full record

ArticleAMB Express2019

Effect of the luxI/R gene on AHL-signaling molecules and QS regulatory mechanism in Hafnia alvei H4.

Xue Li, Gongliang Zhang, Yaolei Zhu, Jingran Bi, Hongshun Hao, Hongman Hou

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Potential quorum-sensing inhibitor ofMicrobiology spectrum · 2023
    Article
  7. The Molecular Weaponry Produced by the BacteriumMolecules (Basel, Switzerland) · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Xue LiSchool of Food Science and Technology, Dalian Polytechnic University, No.1, Qinggongyuan, Ganjingzi District, Dalian, 116034, China.ORCID http://orcid.org/0000-0001-7661-7005
Gongliang ZhangSchool of Food Science and Technology, Dalian Polytechnic University, No.1, Qinggongyuan, Ganjingzi District, Dalian, 116034, China.
Yaolei ZhuSchool of Food Science and Technology, Dalian Polytechnic University, No.1, Qinggongyuan, Ganjingzi District, Dalian, 116034, China.
Jingran BiSchool of Food Science and Technology, Dalian Polytechnic University, No.1, Qinggongyuan, Ganjingzi District, Dalian, 116034, China.
Hongshun HaoLiaoning Key Lab for Aquatic Processing Quality and Safety, No.1, Qinggongyuan, Ganjingzi District, Dalian, 116034, China.
Hongman HouSchool of Food Science and Technology, Dalian Polytechnic University, No.1, Qinggongyuan, Ganjingzi District, Dalian, 116034, China. houhongman@dlpu.edu.cn.
Dalian Polytechnic University · CNDalian University of Technology · CN

Funding

National Natural Science Foundation of China (No.31871895)Program for Liaoning Innovative Talents in University (No. XLYC1808034)
6 · The paper itself

Abstract

Hafnia alvei H4 is a bacterium subject to regulation by a N-acyl-l-homoserine lactone (AHL)-mediated quorum sensing system and is closely related to the corruption of instant sea cucumber. Studying the effect of Hafnia alvei H4 quorum sensing regulatory genes on AHLs is necessary for the quality and preservation of instant sea cucumber. In this study, the draft genome of H. alvei H4, which comprises a single chromosome of 4,687,151 bp, was sequenced and analyzed and the types of AHLs were analyzed employing thin-layer chromatography (TLC) and high resolution triple quadrupole liquid chromatography/mass spectrometry (LC/MS). Then the wild-type strain of H. alvei H4 and the luxI/R double mutant (ΔluxIR) were compared by transcriptome sequencing (RNA-seq). The results indicate that the incomplete genome sequence revealed the presence of one quorum-sensing (QS) gene set, designated as lasI/expR. Three major AHLs, N-hexanoyl-L-homoserine lactone (C6-HSL), N-butyryl-L-homoserine lactone (C4-HSL), and N-(3-oxo-octanoyl)-L-homoserine lactone (3-oxo-C8-HSL) were found, with C6-HSL being the most abundant. C6-HSL was not detected in the culture of the luxI mutant (ΔluxI) and higher levels of C4-HSL was found in the culture of the luxR mutant (ΔluxR), which suggested that the luxR gene may have a positive effect on C4-HSL production. It was also found that AHL and QS genes are closely related in the absence of luxIR double deletion. The results of this study can further elucidate at the genetic level that luxI and luxR genes are involved in the regulation of AHL.

Indexed as

AHLsGenomeHafnia alveiluxI/luxRTranscriptome

Identifiers

PMID31807954
PMCPMC6895348
OpenAlexW2994392634

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.