Evidence map›Paper›PMID 31807785›Full record

ArticleNucleic acids research2020

AtFKBP53: a chimeric histone chaperone with functional nucleoplasmin and PPIase domains.

Ajit Kumar Singh, Aritreyee Datta, Chacko Jobichen, Sheng Luan, Dileep Vasudevan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  3. Genome-wide identification and expression analyses ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Ajit Kumar SinghInstitute of Life Sciences, Nalco Square, Chandrasekharpur, Bhubaneswar 751023, India.
Aritreyee DattaInstitute of Life Sciences, Nalco Square, Chandrasekharpur, Bhubaneswar 751023, India.
Chacko JobichenDepartment of Biological Sciences, 14 Science Drive 4, National University of Singapore, Singapore 117543.
Sheng LuanDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA.
Dileep VasudevanInstitute of Life Sciences, Nalco Square, Chandrasekharpur, Bhubaneswar 751023, India.
Institute of Life Sciences · INManipal Academy of Higher Education · INNational University of Singapore · SGUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

FKBP53 is one of the seven multi-domain FK506-binding proteins present in Arabidopsis thaliana, and it is known to get targeted to the nucleus. It has a conserved PPIase domain at the C-terminus and a highly charged N-terminal stretch, which has been reported to bind to histone H3 and perform the function of a histone chaperone. To better understand the molecular details of this PPIase with histone chaperoning activity, we have solved the crystal structures of its terminal domains and functionally characterized them. The C-terminal domain showed strong PPIase activity, no role in histone chaperoning and revealed a monomeric five-beta palm-like fold that wrapped over a helix, typical of an FK506-binding domain. The N-terminal domain had a pentameric nucleoplasmin-fold; making this the first report of a plant nucleoplasmin structure. Further characterization revealed the N-terminal nucleoplasmin domain to interact with H2A/H2B and H3/H4 histone oligomers, individually, as well as simultaneously, suggesting two different binding sites for H2A/H2B and H3/H4. The pentameric domain assists nucleosome assembly and forms a discrete complex with pre-formed nucleosomes; wherein two pentamers bind to a nucleosome.

Indexed as

ArabidopsisArabidopsis ProteinsBinding SitesChromatin Assembly and DisassemblyCrystallography, X-RayHistonesMolecular ChaperonesNucleoplasminsNucleosomesPeptidylprolyl IsomeraseProtein BindingProtein DomainsProtein FoldingTacrolimus Binding ProteinsArabidopsis ProteinsFKBP53 protein, ArabidopsisHistonesMolecular ChaperonesNucleoplasminsNucleosomesPeptidylprolyl IsomeraseTacrolimus Binding Proteins

Identifiers

PMID31807785
PMCPMC7026663
OpenAlexW2993447071

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.