Evidence map›Paper›PMID 31807777›Full record

ArticleNucleic acids research2020

Phosphorylation of Tet3 by cdk5 is critical for robust activation of BRN2 during neuronal differentiation.

Vinay Kumar Rao, Adusumalli Swarnaseetha, Guo-Hong Tham, Wei-Qi Lin, Bin-Bin Han, Touati Benoukraf, Guo-Liang Xu, Chin-Tong Ong

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Truncated Tau caused by intron retention is enriched in Alzheimer's disease cortex and exhibits altered biochemical properties.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Mechanisms that regulate the activities of TET proteins.Cellular and molecular life sciences : CMLS · 2022
    Review
  8. Review
  9. Article
  10. The role of Cdk5 in neurological disorders.Frontiers in cellular neuroscience · 2022
    Review
  11. Downregulation of the FTO mNature cancer · 2021
    Article
  12. TET3 regulates DNA hydroxymethylation of neuroprotective genes following focal ischemia.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2021
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Vinay Kumar RaoTemasek Life Sciences Laboratory, National University of Singapore, Singapore 117604, Singapore.
Adusumalli SwarnaseethaTemasek Life Sciences Laboratory, National University of Singapore, Singapore 117604, Singapore.
Guo-Hong ThamTemasek Life Sciences Laboratory, National University of Singapore, Singapore 117604, Singapore.
Wei-Qi LinTemasek Life Sciences Laboratory, National University of Singapore, Singapore 117604, Singapore.
Bin-Bin HanState Key Laboratory of Molecular Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai 200031, China.
Touati BenoukrafCancer Science Institute of Singapore, National University of Singapore, Singapore 117599, Singapore.
Guo-Liang XuState Key Laboratory of Molecular Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai 200031, China.
Chin-Tong OngTemasek Life Sciences Laboratory, National University of Singapore, Singapore 117604, Singapore.
Temasek Life Sciences Laboratory · SGChinese Academy of Sciences · CNMemorial University of Newfoundland · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tet3 regulates the dynamic balance between 5-methylcyotsine (5mC) and 5-hydroxymethylcytosine (5hmC) in DNA during brain development and homeostasis. However, it remains unclear how its functions are modulated in a context-dependent manner during neuronal differentiation. Here, we show that cyclin-dependent kinase 5 (cdk5) phosphorylates Tet3 at the highly conserved serine 1310 and 1379 residues within its catalytic domain, changing its in vitro dioxygenase activity. Interestingly, when stably expressed in Tet1, 2, 3 triple-knockout mouse embryonic stem cells (ESCs), wild-type Tet3 induces higher level of 5hmC and concomitant expression of genes associated with neurogenesis whereas phosphor-mutant (S1310A/S1379A) Tet3 causes elevated 5hmC and expression of genes that are linked to metabolic processes. Consistent with this observation, Tet3-knockout mouse ESCs rescued with wild-type Tet3 have higher level of 5hmC at the promoter of neuron-specific gene BRN2 when compared to cells that expressed phosphor-mutant Tet3. Wild-type and phosphor-mutant Tet3 also exhibit differential binding affinity to histone variant H2A.Z. The differential 5hmC enrichment and H2A.Z occupancy at BRN2 promoter is correlated with higher gene expression and more efficient neuronal differentiation of ESCs that expressed wild-type Tet3. Taken together, our results suggest that cdk5-mediated phosphorylation of Tet3 is required for robust activation of neuronal differentiation program.

Indexed as

5-MethylcytosineAnimalsCell DifferentiationCyclin-Dependent Kinase 5CytidineDioxygenasesDNA-Binding ProteinsDNA MethylationGene Expression Regulation, DevelopmentalHistonesMiceMice, KnockoutMouse Embryonic Stem CellsNerve Tissue ProteinsNeurogenesisNeurons5-hydroxymethylcytosine5-methylcytidine5-MethylcytosineCdk5 protein, mouseCyclin-Dependent Kinase 5CytidineDioxygenasesDNA-Binding Proteinshistone H2A.F-ZHistonesNerve Tissue ProteinsPou3f2 protein, mousePOU Domain FactorsTet3 protein, mouse

Identifiers

PMID31807777
PMCPMC7026633
OpenAlexW2993062212

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.