Evidence map›Paper›PMID 31807166›Full record

ArticleOncology letters2019

Slow skeletal muscle troponin T, titin and myosin light chain 3 are candidate prognostic biomarkers for Ewing's sarcoma.

Yajun Deng, Qiqi Xie, Guangzhi Zhang, Shaoping Li, Zuolong Wu, Zhanjun Ma, Xuegang He, Yicheng Gao, Yonggang Wang, Xuewen Kang and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Oncology letters, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Transcriptomic Profile of Canine Mammary Ductal Carcinoma.International journal of molecular sciences · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Yajun DengDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Qiqi XieDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Guangzhi ZhangDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Shaoping LiDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Zuolong WuDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Zhanjun MaDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Xuegang HeDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Yicheng GaoDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Yonggang WangDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Xuewen KangDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Jing WangDepartment of Orthopedics, Lanzhou University Second Hospital, Lanzhou, Gansu 730030, P.R. China.
Lanzhou University · CNLanzhou University Second Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ewing's sarcoma (ES) is a common malignant bone tumor in children and adolescents. Although great efforts have been made to understand the pathogenesis and development of ES, the underlying molecular mechanism remains unclear. The present study aimed to identify new key genes as potential biomarkers for the diagnosis, targeted therapy or prognosis of ES. mRNA expression profile chip data sets GSE17674, GSE17679 and GSE45544 were downloaded from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) were screened using the R software limma package, and functional and pathway enrichment analyses were performed using the enrichplot package and GSEA software. The NetworkAnalyst online tool, as well as Cytoscape and its plug-ins cytoHubba and NetworkAnalyzer, were used to construct a protein-protein interaction network (PPI) and conduct module analysis to screen key (hub) genes. LABSO COX regression and overall survival (OS) analysis of the Hub genes were performed. A total of 211 DEGs were obtained by integrating and analyzing the three data sets. The functions and pathways of the DEGs were mainly associated with the regulation of small-molecule metabolic processes, cofactor-binding, amino acid, proteasome and ribosome biosynthesis in eukaryotes, as well as the Rac1, cell cycle and P53 signaling pathways. A total of one important module and 20 hub genes were screened from the PPI network using the Maximum Correlation Criteria algorithm of cytoHubba. LASSO COX regression results revealed that titin (

Indexed as

bioinformaticsbiomarkersdifferentially expressed genesEwing's sarcomaprognosis

Identifiers

PMID31807166
PMCPMC6876326
OpenAlexW2986754762

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.