Evidence map›Paper›PMID 31805997›Full record

ArticleBMC research notes2019

Identification phenotypic and genotypic characterization of biofilm formation in Escherichia coli isolated from urinary tract infections and their antibiotics resistance.

Elnaz Davari Abad, Amin Khameneh, Leila Vahedi

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  3. Review
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  6. A review of the mechanisms that confer antibiotic resistance in pathotypes ofFrontiers in cellular and infection microbiology · 2024
    Review
  7. Biofilm Formation byMicroorganisms · 2023
    Article
  8. Review
  9. Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Elnaz Davari AbadDepartment Of Microbiology, Faculty of Basic Science, Islamic Azad University, Urmia, Iran.
Amin KhamenehStudent of Medicine, Faculty of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran.
Leila VahediLiver and Gastrointestinal Disease Research Center, Tabriz University of Medical Sciences, Tabriz, Iran. Vahedi.l49@gmail.com.ORCID http://orcid.org/0000-0003-0661-5885
Tabriz University of Medical Sciences · IRIslamic Azad University of Urmia · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveUrinary tract infections (UTIs) are the most common infectious diseases, and Escherichia coli is the most common pathogen isolated from patients with UTIs. The products of sfa, afa and foc genes are important for binding of the bacterium to urinary tract epithelium. Our aim was to investigate these genes in E. colis isolated from patients with UTIS. The frequencies of the genes were determined using PCR. Biofilm formation and antibiotic resistance rates were determined using microtiter plate and disk diffusion methods, respectively. The P < 0.05 was considered statistically significant.

resultsThe frequencies of sfa, afa and foc were 75.3%, 17.5% and 22.5%, respectively showing a significantly higher prevalence of the sfa gene. The most effective antibiotics against the E. colis were nitrofurantoin and amikacin. The highest microbial resistance rates were also observed against amoxicillin and ampicillin. Furthermore, 12.7%, 6.3%, 74.7% and 6.3% of the isolates showed strong, moderate, weak capacities and no connections to form biofilms, respectively. The expression of the sfa gene was significantly associated with forming strong biofilms. Regarding the variabilities in the characteristics of E. coli strains associated with UTIs, it seems reasonable to adjust diagnostic and therapeutic methods according to the regional microbial characteristics.

Indexed as

BiofilmsAnti-Bacterial AgentsCross-Sectional StudiesEscherichia coliEscherichia coli InfectionsGenes, BacterialGenotypeHumansMicrobial Sensitivity TestsPolymerase Chain ReactionUrinary Tract InfectionsAnti-Bacterial Agentsafa geneBiofilm formationEscherichia colifoc geneResistance antibioticssfa geneUrinary tract infection

Identifiers

PMID31805997
PMCPMC6896667
OpenAlexW2991991065

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.