Evidence map›Paper›PMID 31805964›Full record

ArticleVirology journal2019

The tyrosine 73 and serine 83 dephosphorylation of H1N1 swine influenza virus NS1 protein attenuates virus replication and induces high levels of beta interferon.

Jinghua Cheng, Jie Tao, Benqiang Li, Ying Shi, Huili Liu

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Review
  7. Role of CIV NS1 Protein in Innate Immunity and Viral Replication.International journal of molecular sciences · 2023
    Article
  8. Article
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  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jinghua ChengInstitute of Animal Science and Veterinary Medicine, Shanghai, Academy of Agricultural Science, Shanghai, 201106, China.
Jie TaoInstitute of Animal Science and Veterinary Medicine, Shanghai, Academy of Agricultural Science, Shanghai, 201106, China.
Benqiang LiInstitute of Animal Science and Veterinary Medicine, Shanghai, Academy of Agricultural Science, Shanghai, 201106, China.
Ying ShiInstitute of Animal Science and Veterinary Medicine, Shanghai, Academy of Agricultural Science, Shanghai, 201106, China.
Huili LiuInstitute of Animal Science and Veterinary Medicine, Shanghai, Academy of Agricultural Science, Shanghai, 201106, China. huilil@163.com.
Shanghai Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNonstructural protein 1 (NS1) is a virulence factor encoded by influenza A virus (IAV) that is expressed in the nucleus and cytoplasm of host cells during the earliest stages of infection. NS1 is a multifunctional protein that plays an important role in virus replication, virulence and inhibition of the host antiviral immune response. However, to date, the phosphorylation sites of NS1 have not been identified, and the relationship between phosphorylation and protein function has not been thoroughly elucidated.

methodIn this study, potential phosphorylation sites in the swine influenza virus (SIV) NS1 protein were bioinformatically predicted and determined by Phos-tag SDS-PAGE analysis. To study the role of NS1 phosphorylation sites, we rescued NS1 mutants (Y73F and S83A) of A/swine/Shanghai/3/2014(H1N1) strain and compared their replication ability, cytokine production as well as the intracellular localization in cultured cells. Additionally, we used small interfering RNA (siRNA) assay to explore whether changes in the type I IFN response with dephosphorylation at positions 73 and 83 were mediated by the RIG-I pathway.

resultsWe checked 18 predicted sites in 30 SIV NS1 genes to exclude strain-specific sites, covering H1N1, H1N2 and H3N2 subtypes and identified two phosphorylation sites Y73 and S83 in the H1N1 SIV protein by Phos-tag SDS-PAGE analysis. We found that dephosphorylation at positions 73 and 83 of the NS1 protein attenuated virus replication and reduced the ability of NS1 to antagonize IFN-β expression but had no effect on nuclear localization. Knockdown of RIG-I dramatically impaired the induction of IFN-β and ISG56 in NS1 Y73F or S83A mutant-infected cells, indicating that RIG-I plays a role in the IFN-β response upon rSIV NS1 Y73F and rSIV NS1 S83A infection.

conclusionWe first identified two functional phosphorylation sites in the H1N1 SIV protein: Y73 and S83. We found that dephosphorylation at positions 73 and 83 of the NS1 protein affected the antiviral state in the host cells, partly through the RIG-I pathway.

Indexed as

Protein Processing, Post-TranslationalVirus ReplicationAnimalsCytokinesDogsHEK293 CellsHost-Pathogen InteractionsHumansImmunologic FactorsInfluenza A Virus, H1N1 SubtypeInterferon-betaMadin Darby Canine Kidney CellsMutant ProteinsPhosphorylationSerineTyrosineCytokinesImmunologic FactorsINS1 protein, influenza virusInterferon-betaMutant ProteinsSerineTyrosineViral Nonstructural ProteinsVirulence FactorsInterferon responsesNS1 proteinPhosphorylationRIG-ISwine influenza virus

Identifiers

PMID31805964
PMCPMC6896355
OpenAlexW2994076975

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.