Evidence map›Paper›PMID 31805522›Full record

ArticleGenes & development2020

Fork pausing complex engages topoisomerases at the replisome.

Maksym Shyian, Benjamin Albert, Andreja Moset Zupan, Vitalii Ivanitsa, Gabriel Charbonnet, Daniel Dilg, David Shore

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Diploidy confers genomic instability inbioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. The TIMELESS effort for timely DNA replication and protection.Cellular and molecular life sciences : CMLS · 2023
    Review
  13. Article
  14. Role and Regulation of Pif1 Family Helicases at the Replication Fork.International journal of molecular sciences · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Telomere Replication: Solving Multiple End Replication Problems.Frontiers in cell and developmental biology · 2021
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Maksym ShyianDepartment of Molecular Biology, Institute of Genetics and Genomics of Geneva (iGE3), University of Geneva, Geneva 4, CH-1211, Switzerland.ORCID 0000-0003-4845-2332
Benjamin AlbertDepartment of Molecular Biology, Institute of Genetics and Genomics of Geneva (iGE3), University of Geneva, Geneva 4, CH-1211, Switzerland.
Andreja Moset ZupanDepartment of Molecular Biology, Institute of Genetics and Genomics of Geneva (iGE3), University of Geneva, Geneva 4, CH-1211, Switzerland.
Vitalii IvanitsaDepartment of Molecular Biology, Institute of Genetics and Genomics of Geneva (iGE3), University of Geneva, Geneva 4, CH-1211, Switzerland.
Gabriel CharbonnetDepartment of Molecular Biology, Institute of Genetics and Genomics of Geneva (iGE3), University of Geneva, Geneva 4, CH-1211, Switzerland.
Daniel DilgDepartment of Molecular Biology, Institute of Genetics and Genomics of Geneva (iGE3), University of Geneva, Geneva 4, CH-1211, Switzerland.
David ShoreDepartment of Molecular Biology, Institute of Genetics and Genomics of Geneva (iGE3), University of Geneva, Geneva 4, CH-1211, Switzerland.
University of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Replication forks temporarily or terminally pause at hundreds of hard-to-replicate regions around the genome. A conserved pair of budding yeast replisome components Tof1-Csm3 (fission yeast Swi1-Swi3 and human TIMELESS-TIPIN) act as a "molecular brake" and promote fork slowdown at proteinaceous replication fork barriers (RFBs), while the accessory helicase Rrm3 assists the replisome in removing protein obstacles. Here we show that the Tof1-Csm3 complex promotes fork pausing independently of Rrm3 helicase by recruiting topoisomerase I (Top1) to the replisome. Topoisomerase II (Top2) partially compensates for the pausing decrease in cells when Top1 is lost from the replisome. The C terminus of Tof1 is specifically required for Top1 recruitment to the replisome and fork pausing but not for DNA replication checkpoint (DRC) activation. We propose that forks pause at proteinaceous RFBs through a "sTOP" mechanism ("slowing down with topoisomerases I-II"), which we show also contributes to protecting cells from topoisomerase-blocking agents.

Indexed as

Cell Cycle ProteinsDNA-Binding ProteinsDNA HelicasesDNA ReplicationDNA TopoisomerasesDNA Topoisomerases, Type IMutationProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCell Cycle ProteinsCsm3p protein, S cerevisiaeDNA-Binding ProteinsDNA HelicasesDNA TopoisomerasesDNA Topoisomerases, Type IRrm3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTOF1 protein, S cerevisiaeTOP1 protein, S cerevisiaeCsm3Mrc1replication fork pausingreplisomeRFBTof1Top1Top2topoisomerase

Identifiers

PMID31805522
PMCPMC6938670
OpenAlexW2993085604

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.