Evidence map›Paper›PMID 31805112›Full record

ArticlePloS one2019

Local, nonlinear effects of cGMP and Ca2+ reduce single photon response variability in retinal rods.

Giovanni Caruso, Vsevolod V Gurevich, Colin Klaus, Heidi Hamm, Clint L Makino, Emmanuele DiBenedetto

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Giovanni CarusoCNR Ist Tecnologie Applicate ai Beni Culturali, Roma, Italy.
Vsevolod V GurevichDepartment of Pharmacology, Vanderbilt University Medical Center, Nashville, Tennessee, Unites States of America.
Colin KlausThe Mathematical Biosciences Institute, The Ohio State University, Columbus, Ohio, United States of America.ORCID 0000-0001-9759-4068
Heidi HammDepartment of Pharmacology, Vanderbilt University Medical Center, Nashville, Tennessee, Unites States of America.
Clint L MakinoDepartment of Physiology and Biophysics, Boston University School of Medicine, Boston, Massachusetts, United States of America.ORCID 0000-0002-6005-9069
Emmanuele DiBenedettoDepartment of Mathematics, Vanderbilt University, Nashville, Tennessee, United States of America.
Vanderbilt University Medical Center · USBoston University · USInstitute for Technologies Applied to Cultural Heritage · ITThe Ohio State University · USVanderbilt University · US

Funding

IMMUNOLOGICAL STUDIES OF VISUAL TRANSDUCTION PATHWAYSR01EY006062 · NEI · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E · 1985 to 2017
$5.6M
G PROTEIN STRUCTURE/FUNCTIONR01EY010291 · NEI · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E · 1994 to 2010
$3.9M
Dynamic properties of a glutamate binding domainR01GM068935 · NIGMS · CORNELL UNIVERSITY ITHACA · PI OSWALD, ROBERT E · 2005 to 2018
$3.4M
Modulation of Visual Transduction and Retinal Disease by BicarbonateR01EY023980 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI MAKINO, CLINT L · 2014 to 2017
$1.6M
NEI NIH HHS R01 EY006062NEI NIH HHS R01 EY010291NEI NIH HHS R01 EY023980NIGMS NIH HHS R01 GM068935
6 · The paper itself

Abstract

The single photon response (SPR) in vertebrate photoreceptors is inherently variable due to several stochastic events in the phototransduction cascade, the main one being the shutoff of photoactivated rhodopsin. Deactivation is driven by a random number of steps, each of random duration with final quenching occurring after a random delay. Nevertheless, variability of the SPR is relatively low, making the signal highly reliable. Several biophysical and mathematical mechanisms contributing to variability suppression have been examined by the authors. Here we investigate the contribution of local depletion of cGMP by PDE*, the non linear dependence of the photocurrent on cGMP, Ca2+ feedback by making use of a fully space resolved (FSR) mathematical model, applied to two species (mouse and salamander), by varying the cGMP diffusion rate severalfold and rod outer segment diameter by an order of magnitude, and by introducing new, more refined, and time dependent variability functionals. Globally well stirred (GWS) models, and to a lesser extent transversally well stirred models (TWS), underestimate the role of nonlinearities and local cGMP depletion in quenching the variability of the circulating current with respect to fully space resolved models (FSR). These distortions minimize the true extent to which SPR is stabilized by locality in cGMP depletion, nonlinear effects linking cGMP to current, and Ca2+ feedback arising from the physical separation of E* from the ion channels located on the outer shell, and the diffusion of these second messengers in the cytoplasm.

Indexed as

Models, BiologicalPhotonsSignal TransductionAlgorithmsAnimalsBiomarkersCalciumCyclic GMPMiceRetinal Rod Photoreceptor CellsRod Cell Outer SegmentBiomarkersCalciumCyclic GMP

Identifiers

PMID31805112
PMCPMC6894879
OpenAlexW2993777847

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.