Evidence map›Paper›PMID 31804951›Full record

ArticleGenome research2020

A genome-wide long noncoding RNA CRISPRi screen identifies

Pengfei Cai, Auke B C Otten, Binbin Cheng, Mitsuhiro A Ishii, Wen Zhang, Beibei Huang, Kun Qu, Bryan K Sun

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 86 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Pengfei Cai *Division of Molecular Medicine, Hefei National Laboratory for Physical Sciences at Microscale, the CAS Key Laboratory of Innate Immunity and Chronic Disease, Department of Oncology of the First Affiliated Hospital, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230027, China.ORCID 0000-0002-8350-0988
Auke B C Otten *Department of Dermatology, University of California-San Diego, La Jolla, California 92109, USA.ORCID 0000-0001-5034-9743
Binbin ChengDepartment of Dermatology, University of California-San Diego, La Jolla, California 92109, USA.ORCID 0000-0002-8157-0982
Mitsuhiro A IshiiDepartment of Dermatology, University of California-San Diego, La Jolla, California 92109, USA.ORCID 0000-0001-5282-8342
Wen ZhangDivision of Molecular Medicine, Hefei National Laboratory for Physical Sciences at Microscale, the CAS Key Laboratory of Innate Immunity and Chronic Disease, Department of Oncology of the First Affiliated Hospital, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230027, China.ORCID 0000-0003-2154-8035
Beibei HuangDivision of Molecular Medicine, Hefei National Laboratory for Physical Sciences at Microscale, the CAS Key Laboratory of Innate Immunity and Chronic Disease, Department of Oncology of the First Affiliated Hospital, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230027, China.ORCID 0000-0003-4922-1309
Kun QuDivision of Molecular Medicine, Hefei National Laboratory for Physical Sciences at Microscale, the CAS Key Laboratory of Innate Immunity and Chronic Disease, Department of Oncology of the First Affiliated Hospital, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230027, China.ORCID 0000-0002-5555-8437
Bryan K SunDepartment of Dermatology, University of California-San Diego, La Jolla, California 92109, USA.ORCID 0000-0002-0740-0125
University of California San Diego · USUniversity of Science and Technology of China · CN

Funding

Secreted Regulators of Epidermal HomeostasisK08AR067853 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUN, BRYAN · 2016 to 2020
$908k
Doris Duke Charitable Foundation 2019088NIAMS NIH HHS K08 AR067853
6 · The paper itself

Abstract

Genome-wide association studies indicate that many disease susceptibility regions reside in non-protein-coding regions of the genome. Long noncoding RNAs (lncRNAs) are a major component of the noncoding genome, but their biological impacts are not fully understood. Here, we performed a CRISPR interference (CRISPRi) screen on 2263 epidermis-expressed lncRNAs and identified nine novel candidate lncRNAs regulating keratinocyte proliferation. We further characterized a top hit from the screen, progenitor renewal associated non-coding RNA (

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsGene Expression RegulationGenome-Wide Association StudyHomeostasisRNA InterferenceAnimalsBiomarkersCell CycleCell LineCRISPR-Cas SystemsEpidermisFilaggrin ProteinsGene Expression ProfilingGene Knockdown TechniquesHumansKeratinocytesBiomarkersFilaggrin ProteinsFLG protein, humanRNA, Long Noncoding

Identifiers

PMID31804951
PMCPMC6961571
OpenAlexW2994157673

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.