Evidence map›Paper›PMID 31804539›Full record

ArticleScientific reports2019

Molecular response of Deinococcus radiodurans to simulated microgravity explored by proteometabolomic approach.

Emanuel Ott, Felix M Fuchs, Ralf Moeller, Ruth Hemmersbach, Yuko Kawaguchi, Akihiko Yamagishi, Wolfram Weckwerth, Tetyana Milojevic

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Thiol Reductases inAntioxidants (Basel, Switzerland) · 2022
    Review
  7. Colony growth and biofilm formation ofFrontiers in microbiology · 2022
    Article
  8. Article
  9. Proteomic Response ofLife (Basel, Switzerland) · 2021
    Article
  10. Frontiers in microbiology · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Emanuel OttExtremophiles/Space Biochemistry Group, Department of Biophysical Chemistry, University of Vienna, Vienna, Austria.
Felix M FuchsSpace Microbiology Research Group, Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Centre, Cologne, Germany.
Ralf MoellerSpace Microbiology Research Group, Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Centre, Cologne, Germany.
Ruth HemmersbachDivision of Gravitational Biology, Institute of Aerospace Medicine, German Aerospace Centre, Cologne, Germany.
Yuko KawaguchiPlanetary Exploration Research Centre (PERC), Chiba Institute of Technology (CIT), Chiba, Japan.
Akihiko YamagishiDepartment of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta, Yokohama, Japan.
Wolfram WeckwerthDepartment of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria.
Tetyana MilojevicExtremophiles/Space Biochemistry Group, Department of Biophysical Chemistry, University of Vienna, Vienna, Austria. tetyana.milojevic@univie.ac.at.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regarding future space exploration missions and long-term exposure experiments, a detailed investigation of all factors present in the outer space environment and their effects on organisms of all life kingdoms is advantageous. Influenced by the multiple factors of outer space, the extremophilic bacterium Deinococcus radiodurans has been long-termly exposed outside the International Space Station in frames of the Tanpopo orbital mission. The study presented here aims to elucidate molecular key components in D. radiodurans, which are responsible for recognition and adaptation to simulated microgravity. D. radiodurans cultures were grown for two days on plates in a fast-rotating 2-D clinostat to minimize sedimentation, thus simulating reduced gravity conditions. Subsequently, metabolites and proteins were extracted and measured with mass spectrometry-based techniques. Our results emphasize the importance of certain signal transducer proteins, which showed higher abundances in cells grown under reduced gravity. These proteins activate a cellular signal cascade, which leads to differences in gene expressions. Proteins involved in stress response, repair mechanisms and proteins connected to the extracellular milieu and the cell envelope showed an increased abundance under simulated microgravity. Focusing on the expression of these proteins might present a strategy of cells to adapt to microgravity conditions.

Indexed as

Adaptation, PhysiologicalBacterial ProteinsDeinococcusExtremophilesGene Expression Regulation, BacterialMass SpectrometryMetabolomicsProteomicsSpace FlightStress, PhysiologicalWeightlessness SimulationBacterial Proteins

Identifiers

PMID31804539
PMCPMC6895123

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.