Evidence map›Paper›PMID 31802229›Full record

ArticleVirchows Archiv : an international journal of pathology2020

IGHV mutational status of nodal marginal zone lymphoma by NGS reveals distinct pathogenic pathways with different prognostic implications.

Massimo Granai, Teresa Amato, Arianna Di Napoli, Raffaella Santi, Federica Vergoni, Gioia Di Stefano, Virginia Mancini, Sofya Kovalchuk, Emanuele Cencini, Alberto Giulio Carta and 6 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Virchows Archiv : an international journal of pathology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. TheFrontiers in immunology · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Massimo GranaiDepartment of Medical Biotechnologies, Anatomic Pathology Division, University of Siena, Via delle Scotte, 6, 53100, Siena, Italy.
Teresa AmatoDepartment of Medical Biotechnologies, Anatomic Pathology Division, University of Siena, Via delle Scotte, 6, 53100, Siena, Italy.
Arianna Di NapoliDepartment of Clinical and Molecular Medicine, Pathology Unit, University of Rome "La Sapienza", Rome, Italy.
Raffaella SantiFlorence Pathology Unit, Careggi University Hospital, Florence, Italy.
Federica VergoniFlorence Pathology Unit, Careggi University Hospital, Florence, Italy.
Gioia Di StefanoFlorence Pathology Unit, Careggi University Hospital, Florence, Italy.
Virginia ManciniDepartment of Medical Biotechnologies, Anatomic Pathology Division, University of Siena, Via delle Scotte, 6, 53100, Siena, Italy.
Sofya KovalchukFlorence Hematology Unit, University of Florence, Florence, Italy.
Emanuele CenciniDepartment of Hematology, University of Siena, Siena, Italy.
Alberto Giulio CartaDepartment of Medical Biotechnologies, Anatomic Pathology Division, University of Siena, Via delle Scotte, 6, 53100, Siena, Italy.
Sara AversaDepartment of Medical Biotechnologies, Anatomic Pathology Division, University of Siena, Via delle Scotte, 6, 53100, Siena, Italy.
Marita ZiepertInstitute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany.
Gabriele CeveniniDepartment of Medical Biotechnologies, Anatomic Pathology Division, University of Siena, Via delle Scotte, 6, 53100, Siena, Italy.
Stefano LazziDepartment of Medical Biotechnologies, Anatomic Pathology Division, University of Siena, Via delle Scotte, 6, 53100, Siena, Italy.
Lorenzo LeonciniDepartment of Medical Biotechnologies, Anatomic Pathology Division, University of Siena, Via delle Scotte, 6, 53100, Siena, Italy. lorenzo.leoncini@dbm.unisi.it.
Cristiana BellanDepartment of Medical Biotechnologies, Anatomic Pathology Division, University of Siena, Via delle Scotte, 6, 53100, Siena, Italy.
University of Siena · ITAzienda Ospedaliero-Universitaria Careggi · ITLeipzig University · DESapienza University of Rome · ITUniversity of Florence · IT

Funding

Ministry of Educatio (I) 0
6 · The paper itself

Abstract

The precise B cell of origin and molecular pathogenesis of nodal marginal zone lymphoma (NMZL) remain poorly defined. To date, due to the rarity of NMZL, the vast majority of already-published studies have been conducted on a limited number of samples and the technical approach to analyze the immunoglobulin genes was of amplifying rearranged variable region genes with the classical direct sequencing of the PCR products followed by cloning. Here, we studied the B cell Ig heavy-chain repertoires by next-generation sequencing (NGS) in 30 NMZL cases. Most of the cases were mutated (20/28; 71.5%) with homologies to the respective germ line genes ranging from 85 to 97, 83%, whereas 8/28 (28.5%) were unmutated. In addition, our results show that NMZL cases have a biased usage of specific immunoglobulin heavy-chain variable (IGHV) region genes. Moreover, we documented intraclonal diversity in all (100%) of the mutated cases and ongoing somatic hypermutations (SHM) have been confirmed by hundreds of reads. We analyzed the mutational pattern to detect and quantify antigen selection pressure and we found a positive selection in 4 cases, whereas in the remaining cases there was an unspecific stimulation. Finally, the disease-specific survival and the progression-free survival were significantly different between cases with mutated and unmutated IGHV genes, pointing out mutational status as a possible new biomarker in NMZL.

Indexed as

AgedAged, 80 and overB-LymphocytesFemaleHigh-Throughput Nucleotide SequencingHumansImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionLymphoma, B-Cell, Marginal ZoneMaleMutationPrognosisSplenic NeoplasmsImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionBCRClonality analysisNGSNodal marginal zone lymphomas

Identifiers

PMID31802229
PMCPMC7320062
OpenAlexW2993076296

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.